Pre_GI: BLASTP Hits

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Query: NC_009439:442890:477445 Pseudomonas mendocina ymp, complete genome

Start: 477445, End: 478854, Length: 1410

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4312892:4348235434823543496441410Pseudomonas poae RE*1-1-14, complete genomeS-adenosyl-L-homocysteine hydrolase0868
NC_007912:556000:5717015717015731041404Saccharophagus degradans 2-40, complete genomeGlutamine synthetase type I0738
NC_017162:1228723:1253297125329712546791383Acinetobacter baumannii 1656-2 chromosome, complete genomesahH0725
NC_008260:2961291:2962561296256129639491389Alcanivorax borkumensis SK2, complete genomeadenosylhomocysteinase0722
NC_016027:1647110:1672522167252216738201299Gluconacetobacter xylinus NBRC 3288, complete genomeadenosylhomocysteinase4e-146518
NC_007484:3035068:3035068303506830363811314Nitrosococcus oceani ATCC 19707, complete genomeS-adenosyl-L-homocysteine hydrolase3e-142505
NC_014972:1035124:1053339105333910546251287Desulfobulbus propionicus DSM 2032 chromosome, complete genomeadenosylhomocysteinase2e-140499
NC_008343:61191:7073670736720581323Granulibacter bethesdensis CGDNIH1, complete genomeadenosylhomocysteinase2e-140499
NC_018644:446102:4590134590134602931281Alpha proteobacterium HIMB59 chromosome, complete genomeadenosylhomocysteinase5e-137488
NC_013037:5442131:5455752545575254570681317Dyadobacter fermentans DSM 18053, complete genomeadenosylhomocysteinase1e-135483
NC_008576:4130000:4149295414929541506201326Magnetococcus sp. MC-1, complete genomeadenosylhomocysteinase1e-135483
NC_011026:2269986:2271246227124622725531308Chloroherpeton thalassium ATCC 35110, complete genomeadenosylhomocysteinase2e-131469
NC_015731:2039317:2040325204032520417581434Nitrosomonas sp. Is79A3 chromosome, complete genomeAdenosylhomocysteinase1e-127456
NC_014623:7720828:7720828772082877222431416Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeadenosylhomocysteinase2e-126453
NC_009091:1514770:1537826153782615392441419Prochlorococcus marinus str. MIT 9301, complete genomeputative adenosylhomocysteinase3e-123442
NC_014758:579741:5939075939075953101404Calditerrivibrio nitroreducens DSM 19672 chromosome, completeadenosylhomocysteinase2e-122439
NC_008817:1574506:1597597159759715990361440Prochlorococcus marinus str. MIT 9515, complete genomeputative adenosylhomocysteinase4e-122438
NC_009482:87193:1035471035471049831437Synechococcus sp. RCC307 chromosome, complete genomeS-adenosyl-L-homocysteine hydrolase5e-122438
NC_007512:771975:7739567739567753711416Pelodictyon luteolum DSM 273, complete genomeS-adenosyl-L-homocysteine hydrolase6e-121434
NC_009615:3308538:3309502330950233109201419Parabacteroides distasonis ATCC 8503 chromosome, complete genomeS-adenosyl-L-homocysteine hydrolase1e-119430
NC_009952:3596399:3607055360705536084431389Dinoroseobacter shibae DFL 12, complete genomeadenosylhomocysteinase5e-119428
NC_013166:242863:2458952458952472921398Kangiella koreensis DSM 16069, complete genomeadenosylhomocysteinase1e-117423
NC_003450:788000:7886607886607900961437Corynebacterium glutamicum ATCC 13032, complete genomeS-adenosyl-L-homocysteine hydrolase2e-117422
NC_008358:798390:8004718004718018801410Hyphomonas neptunium ATCC 15444, complete genomeadenosylhomocysteinase2e-115416
NC_013223:2609697:2613880261388026153011422Desulfohalobium retbaense DSM 5692, complete genomeadenosylhomocysteinase2e-113410
NC_012726:1292671:1298805129880513001151311Sulfolobus islandicus M.16.4 chromosome, complete genomeS-adenosyl-L-homocysteine hydrolase2e-76286
NC_008818:1127575:1144756114475611460091254Hyperthermus butylicus DSM 5456, complete genomeAdenosylhomocysteinase4e-73275
NC_009440:2151638:2158767215876721600561290Metallosphaera sedula DSM 5348 chromosome, complete genomeS-adenosyl-L-homocysteine hydrolase1e-71271
NC_013939:1535071:1536439153643915376981260Deferribacter desulfuricans SSM1, complete genomeS-adenosyl-L-homocysteine hydrolase2e-71270
NC_011296:102650:1130301130301142891260Thermodesulfovibrio yellowstonii DSM 11347, complete genomeS-adenosyl-L-homocysteine hydrolase4e-71269
NC_003413:337963:3556813556813569461266Pyrococcus furiosus DSM 3638, complete genomeS-adenosyl-L-homocysteine hydrolase5e-68258
NC_014122:549932:5910115910115922611251Methanocaldococcus infernus ME chromosome, complete genomeadenosylhomocysteinase8e-67254
NC_000961:473077:4834464834464847231278Pyrococcus horikoshii OT3, complete genomeS-adenosyl-L-homocysteine hydrolase1e-64247
NC_015636:1455700:1473696147369614749731278Methanothermococcus okinawensis IH1 chromosome, complete genomeadenosylhomocysteinase1e-64247
NC_013407:1478811:1481086148108614823331248Methanocaldococcus vulcanius M7, complete genomeadenosylhomocysteinase2e-64246
NC_008698:560529:5737055737055750031299Thermofilum pendens Hrk 5, complete genomeadenosylhomocysteinase1e-63244
NC_000917:1778173:1800661180066118018781218Archaeoglobus fulgidus DSM 4304, complete genomeS-adenosyl-L-homocysteine hydrolase2e-62240
NC_011978:493800:5174815174815186951215Thermotoga neapolitana DSM 4359, complete genomeAdenosylhomocysteinase1e-61238
NC_003901:2685716:2715977271597727172121236Methanosarcina mazei Go1, complete genomeS-adenosyl-L-homocysteine hydrolase5e-61235
NC_018876:996855:1007430100743010086651236Methanolobus psychrophilus R15 chromosome, complete genomeS-adenosyl-L-homocysteine hydrolase6e-60232
NC_019977:1897556:1908624190862419098591236Methanomethylovorans hollandica DSM 15978, complete genomeadenosylhomocysteinase1e-58227
NC_014253:729996:7479727479727492071236Methanohalobium evestigatum Z-7303 chromosome, complete genomeadenosylhomocysteinase4e-57222
NC_015873:1901939:1901939190193919031801242Megasphaera elsdenii DSM 20460, complete genomeadenosylhomocysteinase7e-57221
NC_007955:1254051:1271980127198012732151236Methanococcoides burtonii DSM 6242, complete genomeadenosylhomocysteinase7e-56218
NC_015676:546895:5482365482365494711236Methanosalsum zhilinae DSM 4017 chromosome, complete genomeadenosylhomocysteinase7e-53208
NC_010003:1577934:1580904158090415821301227Petrotoga mobilis SJ95, complete genomeadenosylhomocysteinase4e-51202
NC_014507:2568933:2591057259105725922831227Methanoplanus petrolearius DSM 11571 chromosome, complete genomeadenosylhomocysteinase1e-50201
NC_012029:45462:6077460774620631290Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeadenosylhomocysteinase2e-47190
NC_016642:757964:7638367638367649541119Pseudovibrio sp. FO-BEG1 chromosome, complete genomeadenosylhomocysteinase1e-38161
NC_007777:4892150:4900640490064049018241185Frankia sp. CcI3, complete genomeS-adenosyl-L-homocysteine hydrolase2e-1170.9
NC_015957:2726816:2730129273012927312501122Streptomyces violaceusniger Tu 4113 chromosome, complete genomeNAD-binding S-adenosyl-L-homocysteine hydrolase2e-1067.8