Pre_GI: BLASTP Hits

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Query: NC_009439:442890:470321 Pseudomonas mendocina ymp, complete genome

Start: 470321, End: 470719, Length: 399

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008260:3053775:306457530645753065099525Alcanivorax borkumensis SK2, complete genomerubredoxin5e-2096.3
NC_008740:683081:696986696986697504519Marinobacter aquaeolei VT8, complete genomeRubredoxin-type Fe(Cys)4 protein5e-1992.8
NC_008740:443274:500493500493501011519Marinobacter aquaeolei VT8, complete genomeRubredoxin-type Fe(Cys)4 protein7e-1992.4
NC_009439:442890:469752469752470285534Pseudomonas mendocina ymp, complete genomerubredoxin-type Fe(Cys)4 protein9e-1889
NC_008826:539835:555735555735555926192Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein4e-1476.6
NC_015172:3095781:309578130957813096515735Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeflavin reductase domain protein FMN-binding protein4e-1063.5
NC_020209:4643901:466102346610234661190168Pseudomonas poae RE*1-1-14, complete genomerubredoxin1e-0962
NC_016745:1719800:1741208174120817425961389Oceanimonas sp. GK1 chromosome, complete genomerubredoxin-NAD(+) reductase6e-0959.7
NC_014315:2659479:268175726817572681921165Nitrosococcus watsoni C-113 chromosome, complete genomerubredoxin-type Fe(Cys)4 protein8e-0958.9
NC_014752:1331447:134548513454851345655171Neisseria lactamica ST-640, complete genomerubredoxin1e-0858.2
NC_008826:539835:555562555562555738177Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencerubredoxin4e-0856.6
NC_015379:2505233:253276225327622532968207Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,rubredoxin5e-0856.2
NC_018870:2316499:236735823673582368029672Thermacetogenium phaeum DSM 12270 chromosome, complete genomeputative rubredoxin6e-0856.2
NC_007644:626992:643906643906644064159Moorella thermoacetica ATCC 39073, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0754.3
NC_008820:2422000:243280424328042432965162Prochlorococcus marinus str. MIT 9303, complete genomeRubredoxin2e-0754.3
NC_020134:2772500:279024527902452790466222Clostridium stercorarium subsp. stercorarium DSM 8532, completerubredoxin2e-0754.3
NC_015474:1490668:149126414912641491425162Pyrococcus sp. NA2 chromosome, complete genomerubredoxin2e-0754.3
NC_019970:510632:522193522193522357165Thermoanaerobacterium thermosaccharolyticum M0795, complete genomerubredoxin3e-0753.5
NC_014410:525645:535169535169535327159Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Rubredoxin-type Fe(Cys)4 protein4e-0753.5
NC_012883:1695703:170222017022201702384165Thermococcus sibiricus MM 739, complete genomeRubredoxin9e-0752.4
NC_014377:210888:215027215027215185159Thermosediminibacter oceani DSM 16646 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein1e-0652.4
NC_015555:430054:439224439224439382159Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeRubredoxin-type Fe(Cys)4 protein1e-0652
NC_011653:1574415:159341715934171593575159Thermosipho africanus TCF52B, complete genomerubredoxin1e-0652
NC_015680:841783:859983859983860144162Pyrococcus yayanosii CH1 chromosome, complete genomerubredoxin2e-0651.2
NC_009512:1025365:104051910405191040698180Pseudomonas putida F1, complete genomeRubredoxin-type Fe(Cys)4 protein2e-0651.2
NC_015589:626321:642716642716642871156Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRubredoxin-type Fe(Cys)4 protein3e-0650.8
NC_009718:731670:738699738699738860162Fervidobacterium nodosum Rt17-B1, complete genomerubredoxin-type Fe(Cys)4 protein6e-0649.7
NC_010084:988908:100094410009441001246303Burkholderia multivorans ATCC 17616 chromosome 1, completerubredoxin-type Fe(Cys)4 protein6e-0649.7
NC_014618:1040381:1065069106506910665171449Enterobacter cloacae SCF1 chromosome, complete genomeflavodoxin/nitric oxide synthase7e-0649.3
NC_009465:90000:112092112092112262171Candidatus Vesicomyosocius okutanii HA, complete genomerubredoxin8e-0649.3
NC_000909:657904:668698668698668865168Methanocaldococcus jannaschii DSM 2661, complete genomerubredoxin 2 (rd2)9e-0648.9