Pre_GI: BLASTP Hits

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Query: NC_009439:442890:462619 Pseudomonas mendocina ymp, complete genome

Start: 462619, End: 463311, Length: 693

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008740:443274:493318493318494058741Marinobacter aquaeolei VT8, complete genomeOmpW family protein1e-53209
NC_008781:2611702:261818226181822618817636Polaromonas naphthalenivorans CJ2, complete genomeOmpW family protein2e-2099.4
NC_015138:201323:206054206054206800747Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeOmpW family protein8e-2097.1
NC_008752:166877:169644169644170411768Acidovorax avenae subsp. citrulli AAC00-1, complete genomeOmpW family protein1e-1996.7
NC_004463:1898648:192662119266211927211591Bradyrhizobium japonicum USDA 110, complete genomeouter membrane protein1e-1687
NC_017249:8283701:832714083271408327871732Bradyrhizobium japonicum USDA 6, complete genomeouter membrane protein1e-1686.7
NC_012667:504534:525570525570526223654Vibrio cholerae MJ-1236 chromosome 2, complete genomeouter membrane protein W7e-1580.9
NC_010473:1384000:140144014014401402078639Escherichia coli str. K-12 substr. DH10B, complete genomeouter membrane protein W8e-1580.5
NC_013364:1997891:199929319992931999931639Escherichia coli O111:H- str. 11128, complete genomeouter membrane protein W2e-1479.3
NC_020211:2882093:291333429133342913966633Serratia marcescens WW4, complete genomeouter membrane protein W2e-1479.3
NC_009801:1392696:141721914172191417857639Escherichia coli E24377A, complete genomeouter membrane protein W3e-1478.6
NC_007606:1209132:122312212231221223760639Shigella dysenteriae Sd197, complete genomeputative outer membrane protein4e-1478.2
NC_020063:2531643:253773625377362538371636Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein W9e-1477
NC_016628:537137:541437541437542081645Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceouter membrane protein W2e-1376.3
NC_007645:3712272:373099037309903731661672Hahella chejuensis KCTC 2396, complete genomeOuter membrane protein W3e-1375.5
NC_012779:1629731:164611516461151646756642Edwardsiella ictaluri 93-146, complete genomeouter membrane protein W3e-1375.1
NC_009074:2117500:211818721181872118831645Burkholderia pseudomallei 668 chromosome I, complete sequenceouter membrane protein, OmpW family1e-1066.6
NC_009138:2242470:225444522544452255065621Herminiimonas arsenicoxydans, complete genomeputative Outer membrane protein W1e-0963.5
NC_013209:2759160:277782427778242778657834Acetobacter pasteurianus IFO 3283-01, complete genomeouter membrane protein OmpW3e-0858.5
NC_008543:2871747:290052529005252901250726Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceOmpW family protein5e-0754.7
NC_011001:63986:908579085791582726Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative outer membrane protein-OmpW family8e-0753.9
NC_014910:4316706:433424343342434334938696Alicycliphilus denitrificans BC chromosome, complete genomeompw family protein4e-0651.6
NC_006677:1052031:107172210717221072540819Gluconobacter oxydans 621H, complete genomeOuter membrane channel lipoprotein5e-0651.6
NC_016147:3023180:302669430266943027386693Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeouter membrane protein5e-0651.2