Pre_GI: BLASTP Hits

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Query: NC_009439:442890:453606 Pseudomonas mendocina ymp, complete genome

Start: 453606, End: 456260, Length: 2655

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008740:443274:5026435026435052132571Marinobacter aquaeolei VT8, complete genomeregulatory protein, LuxR6e-114412
NC_008740:683081:7002317002317028672637Marinobacter aquaeolei VT8, complete genomeregulatory protein, LuxR9e-110398
NC_008260:3053775:3060396306039630630142619Alcanivorax borkumensis SK2, complete genomealkB1GHJ regulator8e-103375
NC_008314:1465643:1487752148775214905262775Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, LuxR-family7e-28126
NC_016584:1436710:1444035144403514466622628Desulfosporosinus orientis DSM 765 chromosome, complete genomeATP-dependent transcriptional regulator1e-1586.3
NC_013757:1732747:1736330173633017390622733Geodermatophilus obscurus DSM 43160, complete genomeATP-dependent transcriptional regulator, MalT- like, LuxR family5e-1480.5
NC_011420:3822765:3835639383563938383622724Rhodospirillum centenum SW, complete genometranscriptional regulator, LuxR family protein2e-1378.6
NC_017033:2758582:2759804275980427625362733Frateuria aurantia DSM 6220 chromosome, complete genomeATP-dependent transcriptional regulator2e-1378.6
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator4e-1067.4
NC_004129:5846415:5874989587498958777242736Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LuxR family4e-0964.3
NC_012982:2772976:2775292277529227780092718Hirschia baltica ATCC 49814, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family5e-0963.9
NC_017208:5096759:511447251144725115113642Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetwo-component response regulator comA2e-0861.6
NC_011725:5043198:506312850631285063769642Bacillus cereus B4264 chromosome, complete genomecompetence protein A2e-0861.6
NC_011283:4438500:4484630448463044873952766Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AcoK3e-0861.2
NC_012731:1088321:1093493109349310962582766Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometrans-acting regulatory protein of aco operon1e-0759.7
NC_008826:539835:5527315527315554362706Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceATP-dependent transcriptional regulator-like protein protein3e-0757.8
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein5e-0757.4
NC_009142:2565561:258504625850462585729684Saccharopolyspora erythraea NRRL 2338, complete genomeresponse regulator, two-component system9e-0756.6
NC_014966:431342:438170438170438814645Vibrio vulnificus MO6-24/O chromosome II, complete sequenceVpsT family transcripitonal regulator8e-0756.6
NC_005140:444353:450202450202450861660Vibrio vulnificus YJ016 chromosome II, complete sequenceDNA-binding HTH domain-containing protein8e-0756.6
NC_019757:3869047:388598738859873886706720Cylindrospermum stagnale PCC 7417, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain8e-0756.6
NC_004460:1718088:172492817249281725560633Vibrio vulnificus CMCP6 chromosome II, complete sequenceDNA-binding HTH domain-containing protein8e-0756.6
NC_007908:4677856:4680475468047546831592685Rhodoferax ferrireducens T118, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family2e-0655.5
NC_015968:4389871:4389871438987143925762706Enterobacter asburiae LF7a chromosome, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family1e-0553.1