Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:442890:450481 Pseudomonas mendocina ymp, complete genome

Start: 450481, End: 451080, Length: 600

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014153:2077647:2082305208230520836601356Thiomonas intermedia K12 chromosome, complete genometransposase IS4 family protein6e-90329
NC_008609:2787274:2796154279615427975121359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein2e-68258
NC_008609:1027838:1062510106251010638681359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein2e-68258
NC_008609:1976403:1976403197640319777611359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein2e-68258
NC_008609:3011059:3023875302387530252331359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein2e-68258
NC_008609:112340:1202191202191215771359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein1e-67255
NC_008609:3732192:3762208376220837635661359Pelobacter propionicus DSM 2379, complete genometransposase, IS4 family protein1e-67255
NC_010803:634497:6450226450226463891368Chlorobium limicola DSM 245, complete genometransposase IS4 family protein2e-66251
NC_010803:2474554:2486790248679024881571368Chlorobium limicola DSM 245, complete genometransposase IS4 family protein2e-66251
NC_010803:242705:2551852551852565521368Chlorobium limicola DSM 245, complete genometransposase IS4 family protein2e-66251
NC_010803:2474554:2497545249754524989121368Chlorobium limicola DSM 245, complete genometransposase IS4 family protein2e-66251
NC_015731:169989:1842751842751856271353Nitrosomonas sp. Is79A3 chromosome, complete genometransposase IS4 family protein4e-65247
NC_006824:109735:1142801142801156351356Azoarcus sp. EbN1 plasmid 2, complete sequencetransposase5e-65247
NC_008639:2968000:3021369302136930228981530Chlorobium phaeobacteroides DSM 266, complete genometransposase, IS4 family protein5e-64243
NC_008740:443274:506529506529507020492Marinobacter aquaeolei VT8, complete genometransposase1e-56218
NC_011365:2996488:3003025300302530043681344Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genometransposase IS1182 family protein1e-42172
NC_011365:1969198:1974888197488819762311344Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genometransposase IS1182 family protein1e-42172
NC_010125:3393368:3408953340895334102961344Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transposase1e-42172
NC_014623:3462500:346424134642413464936696Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase2e-41169
NC_006177:324363:3540793540793552241146Symbiobacterium thermophilum IAM 14863, complete genometransposase5e-36150
NC_006177:2211458:2223057222305722244151359Symbiobacterium thermophilum IAM 14863, complete genometransposase2e-35148
NC_006177:2211458:2220629222062922220051377Symbiobacterium thermophilum IAM 14863, complete genometransposase2e-35148
NC_006177:2883476:2900678290067829020361359Symbiobacterium thermophilum IAM 14863, complete genometransposase3e-35148
NC_006177:3549467:3554328355432835556861359Symbiobacterium thermophilum IAM 14863, complete genometransposase1e-34145
NC_011059:2478075:2482332248233224836661335Prosthecochloris aestuarii DSM 271, complete genome6e-34143
NC_006177:2398482:244766624476662448160495Symbiobacterium thermophilum IAM 14863, complete genometransposase2e-31135
NC_011892:77975:8459584595859291335Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetransposase IS4 family protein2e-29128
NC_011894:2747491:2759510275951027608441335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein2e-29128
NC_011894:7702000:7703584770358477049181335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein2e-29128
NC_011894:2125474:2127166212716621285001335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein2e-29128
NC_011894:7563668:7593489759348975948231335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein2e-29128
NC_011894:6888562:6893156689315668944901335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein2e-29128
NC_011887:72364:8861888618899521335Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completetransposase IS4 family protein2e-29128
NC_013223:724394:7494277494277539054479Desulfohalobium retbaense DSM 5692, complete genome5e-26117
NC_010125:3854957:386551238655123865910399Gluconacetobacter diazotrophicus PAl 5, complete genometransposase6e-26117
NC_013223:1349000:1374030137403013753671338Desulfohalobium retbaense DSM 5692, complete genometransposase IS4 family protein6e-26117
NC_011894:3319856:3324019332401933253531335Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein6e-26117
NC_013223:724394:7500097500097513461338Desulfohalobium retbaense DSM 5692, complete genometransposase IS4 family protein1e-25116
NC_016027:1647110:169304716930471693529483Gluconacetobacter xylinus NBRC 3288, complete genometransposase2e-25115
NC_007796:1731500:1753568175356817552051638Methanospirillum hungatei JF-1, complete genometransposase5e-25114
NC_007796:3379614:3388462338846233900991638Methanospirillum hungatei JF-1, complete genometransposase5e-25114
NC_002927:4392768:439730443973044397597294Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-23109
NC_016027:2047954:208998020899802090369390Gluconacetobacter xylinus NBRC 3288, complete genometransposase2e-23108
NC_019892:2684793:268833126883312688801471Singulisphaera acidiphila DSM 18658 chromosome, complete genome2e-22105
NC_015572:3091707:3116765311676531182761512Methylomonas methanica MC09 chromosome, complete genometransposase IS4 family protein6e-22103
NC_015572:65597:8760187601891121512Methylomonas methanica MC09 chromosome, complete genometransposase IS4 family protein6e-22103
NC_003552:1234712:1246905124690512483891485Methanosarcina acetivorans C2A, complete genometransposase7e-21100
NC_012914:4238142:4243847424384742453971551Paenibacillus sp. JDR-2, complete genometransposase IS4 family protein1e-2099.8
NC_008825:2889933:2916050291605029174951446Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-2099.8
NC_012791:4736084:4748063474806347495111449Variovorax paradoxus S110 chromosome 1, complete genometransposase IS4 family protein8e-2097.1
NC_011000:2831183:2847120284712028484991380Burkholderia cenocepacia J2315 chromosome 1, complete sequence9e-2096.7
NC_014657:1775929:1784713178471317865391827Caldicellulosiruptor owensensis OL chromosome, complete genometransposase is4 family protein2e-1995.9
NC_013124:1439915:1446343144634314476711329Acidimicrobium ferrooxidans DSM 10331, complete genome3e-1995.1
NC_007796:412000:4266144266144282241611Methanospirillum hungatei JF-1, complete genometransposase, IS43e-1994.7
NC_002947:2157648:2177762217776221791981437Pseudomonas putida KT2440, complete genomehypothetical protein1e-1789.7
NC_003552:1234712:124960612496061250430825Methanosarcina acetivorans C2A, complete genometransposase2e-1789.4
NC_007796:2387002:2412642241264224140931452Methanospirillum hungatei JF-1, complete genome1e-1686.3
NC_003552:3479000:3493235349323534948301596Methanosarcina acetivorans C2A, complete genomehypothetical protein1e-1686.3
NC_020829:940692:9607179607179621531437Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein1e-1686.3
NC_009050:811358:8435018435018446731173Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencetransposase, IS4 family protein3e-1684.7
NC_016626:1825845:1848313184831318496621350Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase IS4 family protein8e-1683.6
NC_007948:1972290:1988642198864219897031062Polaromonas sp. JS666, complete genometransposase IS4 family2e-1582.4
NC_008262:227354:2277702277702293351566Clostridium perfringens SM101, complete genomeISCpe5, transposase2e-1582.4
NC_010125:1051735:106247510624751062762288Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transposase6e-1580.5
NC_021182:4829000:4841785484178548432361452Clostridium pasteurianum BC1, complete genometransposase8e-1580.1
NC_016626:1699500:1734505173450517358721368Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase domain-containing protein1e-1479.7
NC_015856:268034:2745272745272759661440Collimonas fungivorans Ter331 chromosome, complete genometransposase3e-1478.2
NC_015578:247266:285433285433286065633Treponema primitia ZAS-2 chromosome, complete genome4e-1477.8
NC_016027:2047954:206949020694902069873384Gluconacetobacter xylinus NBRC 3288, complete genometransposase6e-1477.4
NC_016626:1781956:1791698179169817931281431Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase domain-containing protein7e-1477
NC_017249:7341428:735085573508557351496642Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1376.6
NC_015856:764651:7720667720667734961431Collimonas fungivorans Ter331 chromosome, complete genometransposase2e-1375.9
NC_002516:1474000:1481334148133414827581425Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-1375.5
NC_007498:3540945:3549778354977835513281551Pelobacter carbinolicus DSM 2380, complete genometransposase IS4 family3e-1375.1
NC_007498:1611986:1622664162266416242141551Pelobacter carbinolicus DSM 2380, complete genomeputative transposase or inactivated derivative3e-1375.1
NC_009434:608765:6434746434746449041431Pseudomonas stutzeri A1501, complete genomehypothetical protein4e-1374.7
NC_020156:3670500:367339936733993674313915Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase1e-1272.8
NC_020541:4122852:4160409416040941619231515Rhodanobacter sp. 2APBS1, complete genometransposase1e-1272.8
NC_020156:3050423:3061281306128130628371557Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase2e-1272.4
NC_020156:3670500:367659736765973677100504Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase2e-1272
NC_018866:1706000:171034917103491710915567Dehalobacter sp. DCA chromosome, complete genomeISPsy6, transposase2e-1272
NC_016027:2047954:206976520697652070382618Gluconacetobacter xylinus NBRC 3288, complete genometransposase3e-1271.6
NC_020156:3050423:3058082305808230596381557Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase3e-1271.6
NC_020156:3670500:3670559367055936721151557Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase3e-1271.6
NC_020156:3670500:3680407368040736819631557Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase3e-1271.6
NC_017342:1254000:1272885127288512745311647Staphylococcus aureus subsp. aureus TCH60 chromosome, completeIS1272 transposase4e-1271.2
NC_015577:3776295:3781146378114637826841539Treponema azotonutricium ZAS-9 chromosome, complete genometransposase, IS4 family protein5e-1271.2
NC_015577:1974821:1983757198375719852951539Treponema azotonutricium ZAS-9 chromosome, complete genometransposase, IS4 family protein5e-1271.2
NC_009720:3377071:3377071337707133784921422Xanthobacter autotrophicus Py2, complete genometransposase IS4 family protein5e-1270.9
NC_010725:4035397:4071817407181740732531437Methylobacterium populi BJ001, complete genometransposase IS4 family protein8e-1270.1
NC_007492:3180480:3218775321877532201931419Pseudomonas fluorescens PfO-1, complete genomeTransposase, IS42e-1168.9
NC_004663:44647:677106771068333624Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein3e-1168.6
NC_015577:3776295:378551237855123786402891Treponema azotonutricium ZAS-9 chromosome, complete genome4e-1168.2
NC_015437:164194:1766371766371781811545Selenomonas sputigena ATCC 35185 chromosome, complete genomeIS4 family transposase4e-1168.2
NC_012997:2254000:2273459227345922750181560Teredinibacter turnerae T7901, complete genometransposase, IS4 family protein3e-1168.2
NC_020156:3050423:3054257305425730557501494Nonlabens dokdonensis DSW-6, complete genomeISCps6, transposase4e-1167.8
NC_019902:2306961:2308559230855923100611503Thioalkalivibrio nitratireducens DSM 14787, complete genomeISPsy6, transposase5e-1167.8
NC_004578:1719849:1728650172865017301101461Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy6, transposase5e-1167.4
NC_004578:4204235:4217893421789342193531461Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy6, transposase7e-1167.4
NC_020911:1353896:135446013544601354984525Octadecabacter antarcticus 307, complete genome9e-1167
NC_004578:3849835:3865785386578538668581074Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-1167
NC_012997:4906423:4919477491947749209761500Teredinibacter turnerae T7901, complete genometransposase IS4 family protein2e-1065.9
NC_007168:195638:1978831978831995831701Staphylococcus haemolyticus JCSC1435, complete genomeIS1272 transposase2e-1065.5
NC_007168:1923723:1941999194199919436991701Staphylococcus haemolyticus JCSC1435, complete genomeIS1272 transposase2e-1065.5
NC_020164:2219612:2223900222390022256301731Staphylococcus warneri SG1, complete genomeIS1272 transposase2e-1065.5
NC_007168:2415361:2430541243054124319771437Staphylococcus haemolyticus JCSC1435, complete genomeIS1272 transposase2e-1065.5
NC_020164:2329340:2348085234808523497611677Staphylococcus warneri SG1, complete genomeIS1272 transposase2e-1065.5
NC_012997:1820734:1860101186010118615401440Teredinibacter turnerae T7901, complete genometransposase, IS4 family protein2e-1065.5
NC_007168:454000:4721854721854738731689Staphylococcus haemolyticus JCSC1435, complete genomeIS1272 transposase3e-1065.1
NC_007005:98488:1049511049511063691419Pseudomonas syringae pv. syringae B728a, complete genomeTransposase, IS43e-1065.1
NC_012997:4906423:4937063493706349385651503Teredinibacter turnerae T7901, complete genometransposase IS4 family protein7e-1063.9
NC_010995:1648897:1654208165420816557641557Cellvibrio japonicus Ueda107, complete genomeTransposase IS4 family6e-1063.9
NC_010995:3745957:3786635378663537881911557Cellvibrio japonicus Ueda107, complete genomeTransposase IS4 family6e-1063.9
NC_012489:4336790:437365843736584374491834Gemmatimonas aurantiaca T-27, complete genomehypothetical protein6e-1063.9
NC_004461:73390:7577975779774401662Staphylococcus epidermidis ATCC 12228, complete genometruncated transposase1e-0963.2
NC_005957:2196000:221747322174732218045573Bacillus thuringiensis serovar konkukian str. 97-27, completepXO1-120 homology; transposase for IS6601e-0962.8
NC_017341:1851972:187266818726681873141474Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,truncated transposase for IS12721e-0962.8
NC_007795:1774725:179558917955891796080492Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein2e-0962.4
NC_009641:1833000:185242818524281852919492Staphylococcus aureus subsp. aureus str. Newman chromosome,putative transposase for IS12722e-0962.4
NC_016912:1732354:175321817532181753709492Staphylococcus aureus subsp. aureus VC40 chromosome, completeputative transposase for IS12722e-0962.4
NC_017347:1852500:187315818731581873649492Staphylococcus aureus subsp. aureus T0131 chromosome, completetransposase for IS12722e-0962.4
NC_015321:4495394:4498481449848145000551575Fluviicola taffensis DSM 16823 chromosome, complete genometransposase IS4 family protein2e-0962
NC_015321:4287945:4301965430196543035391575Fluviicola taffensis DSM 16823 chromosome, complete genometransposase IS4 family protein2e-0962
NC_005957:4680089:468161246816124682184573Bacillus thuringiensis serovar konkukian str. 97-27, completepXO1-120 homology; transposase for IS6605e-0961.2
NC_016048:375676:3824683824683837241257Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase for insertion sequence element4e-0961.2
NC_016048:308342:3146793146793159351257Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase for insertion sequence element4e-0961.2
NC_016048:2907702:2989988298998829913161329Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase for insertion sequence element4e-0961.2
NC_014335:1094000:111025411102541110826573Bacillus cereus biovar anthracis str. CI chromosome, completeIS660 transposase5e-0960.8
NC_014724:439594:4674774674774692191743Lactobacillus amylovorus GRL 1112 chromosome, complete genomeTransposase9e-0960.1
NC_015589:2480365:2501265250126525029041640Desulfotomaculum ruminis DSM 2154 chromosome, complete genome3e-0858.5
NC_016112:1330500:1345125134512513466271503Methylomicrobium alcaliphilum chromosome, complete genometransposase3e-0755.5
NC_010424:825117:8251178251178268501734Candidatus Desulforudis audaxviator MP104C, complete genometransposase, IS4 family protein3e-0755.1
NC_014377:1512217:1519425151942515209001476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein4e-0754.7
NC_014377:1227850:1245337124533712468121476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein4e-0754.7
NC_014377:1985714:2007986200798620094611476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein6e-0754.3
NC_014377:1985714:2001764200176420032391476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein5e-0754.3
NC_014377:1298806:1307821130782113092961476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein5e-0754.3
NC_014377:1985714:1992463199246319939381476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein5e-0754.3
NC_014377:1089894:1101845110184511033201476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein5e-0754.3
NC_014377:1060000:1070638107063810721131476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein5e-0754.3
NC_014377:321949:3319933319933334681476Thermosediminibacter oceani DSM 16646 chromosome, complete genometransposase IS4 family protein4e-0754.3
NC_014377:210888:2233662233662248421477Thermosediminibacter oceani DSM 16646 chromosome, complete genome9e-0753.5
NC_003454:983681:1001088100108810025691482Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeTransposase1e-0653.1
NC_008497:32160:4918549185509811797Lactobacillus brevis ATCC 367, complete genomeTransposase3e-0651.6
NC_015850:169180:1758881758881772821395Acidithiobacillus caldus SM-1 chromosome, complete genomeputative transposase5e-0651.2
NC_019897:1577015:1591916159191615932801365Thermobacillus composti KWC4 chromosome, complete genometransposase7e-0650.4