Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:3770282:3789580 Pseudomonas mendocina ymp, complete genome

Start: 3789580, End: 3790092, Length: 513

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010995:1417329:142651614265161427301786Cellvibrio japonicus Ueda107, complete genomeantirestriction protein family protein5e-72269
NC_015696:285456:291477291477291983507Francisella sp. TX077308 chromosome, complete genomeantirestriction protein7e-26116
NC_013441:1487058:149796614979661498589624Gordonia bronchialis DSM 43247, complete genomeAntirestriction ArdA family protein5e-22103
NC_020453:1881904:191569719156971916257561Agromonas oligotrophica S58 DNA, complete genomeantirestriction protein9e-2095.9
NC_014814:3926676:393263339326333933181549Mycobacterium sp. Spyr1 chromosome, complete genomeantirestriction protein1e-1479.3
NC_007677:1354500:137555013755501376125576Salinibacter ruber DSM 13855, complete genomeantirestriction protein5e-1477
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome2e-1375.1
NC_009089:3889811:390472539047253905222498Clostridium difficile 630, complete genomeputative conjugative transposon antirestriction protein3e-1374.7
NC_007777:1018824:102478410247841025314531Frankia sp. CcI3, complete genomeantirestriction protein6e-1373.6
NC_009921:3098271:314804231480423149007966Frankia sp. EAN1pec, complete genomeAntirestriction ArdA family protein3e-1271.2
NC_009089:428075:447677447677448180504Clostridium difficile 630, complete genomeconjugative tranposon protein4e-1270.9
NC_013316:4095905:411032141103214110824504Clostridium difficile R20291, complete genomeconjugative tranposon protein2e-1168.2
NC_013315:4015119:402953540295354030038504Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein2e-1168.2
NC_017179:4023139:403755540375554038058504Clostridium difficile BI1, complete genomeconjugative transposon protein2e-1168.2
NC_013235:5127148:516067551606755161403729Nakamurella multipartita DSM 44233, complete genomeAntirestriction ArdA family protein4e-1167.8
NC_016630:1247251:126031312603131260810498Filifactor alocis ATCC 35896 chromosome, complete genomeantirestriction protein (ArdA)5e-1167
NC_009089:3935500:395791339579133958416504Clostridium difficile 630, complete genomeconjugative transposon protein6e-1167
NC_009089:581655:589599589599590096498Clostridium difficile 630, complete genomeconjugative transposon protein2e-1065.1
NC_002758:434462:449748449748450248501Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein6e-1063.5
NC_017341:428500:442965442965443465501Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative antirestriction protein6e-1063.5
NC_017347:424500:439303439303439803501Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon protein6e-1063.5
NC_013895:1332832:136497913649791365473495Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeantirestriction protein8e-1063.2
NC_014814:3926676:393611439361143936509396Mycobacterium sp. Spyr1 chromosome, complete genome7e-0960.1
NC_004668:2198027:225899622589962259496501Enterococcus faecalis V583, complete genomehypothetical protein3e-0754.3
NC_015277:4358000:435805743580574358689633Sphingobacterium sp. 21 chromosome, complete genomeAntirestriction ArdA family protein3e-0651.2
NC_004663:44647:760097600976542534Bacteroides thetaiotaomicron VPI-5482, complete genomeputative anti-restriction protein5e-0650.4