Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3781365 Pseudomonas mendocina ymp, complete genome

Start: 3781365, End: 3783581, Length: 2217

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009434:3611738:3745515374551537477342220Pseudomonas stutzeri A1501, complete genomeATP-dependent helicase01367
NC_008463:2467219:2489403248940324916132211Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative helicase01266
NC_009656:4527457:4563274456327445654962223Pseudomonas aeruginosa PA7 chromosome, complete genomeDEAD/DEAH box helicase0974
NC_007952:3196085:3218882321888232211132232Burkholderia xenovorans LB400 chromosome 2, complete sequenceDEAD/DEAH box helicase0816
NC_010002:5691968:5700427570042757026492223Delftia acidovorans SPH-1, complete genomeDEAD/DEAH box helicase domain protein0721
NC_017075:1869326:1869326186932618715332208Rubrivivax gelatinosus IL144, complete genomeputative ATP-dependent helicase0716
NC_014910:1200605:1216539121653912187432205Alicycliphilus denitrificans BC chromosome, complete genomedead/deah box helicase domain protein0711
NC_012918:1444333:1456652145665214588832232Geobacter sp. M21 chromosome, complete genomeDEAD/DEAH box helicase0700
NC_016010:1822212:1842738184273818446961959Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeLhr-like helicase2e-170600
NC_007493:1929000:1939988193998819421592172Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceATP-dependent helicase2e-158559
NC_007333:39579:7194471944741542211Thermobifida fusca YX, complete genomehelicase, C-terminal:DEAD/DEAH box helicase, N-terminal6e-157555
NC_016612:28451:4061740617428152199Klebsiella oxytoca KCTC 1686 chromosome, complete genomeATP-dependent helicase9e-157554
NC_015580:1584078:1597259159725915994332175Novosphingobium sp. PP1Y, complete genomeATP-dependent helicase Lhr and Lhr-like helicase4e-155548
NC_017047:2042346:2051482205148220536802199Rahnella aquatilis HX2 chromosome, complete genomeDEAD/DEAH box helicase2e-152540
NC_008435:2658986:2690170269017026924222253Rhodopseudomonas palustris BisA53, complete genomeDEAD/DEAH box helicase domain protein4e-150532
NC_014217:2020737:2030412203041220326552244Starkeya novella DSM 506 chromosome, complete genomeDEAD/DEAH box helicase domain protein4e-147522
NC_006370:1810842:1829710182971018319082199Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical ATP-dependent helicase7e-146518
NC_007907:761486:7848037848037869652163Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-97355
NC_008639:2545107:2552272255227225544042133Chlorobium phaeobacteroides DSM 266, complete genomeDEAD/DEAH box helicase domain protein5e-94345
NC_015172:850802:8538618538618560262166Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeDEAD/DEAH box helicase domain protein2e-92340
NC_014408:682689:6826896826896848212133Methanothermobacter marburgensis str. Marburg chromosome, completeATP-dependent helicase5e-60233
NC_013440:1624561:1625910162591016286872778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease5e-57223
NC_013440:811780:8131298131298159062778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease6e-57223
NC_011891:1278199:1298935129893513010402106Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/DEAH box helicase domain protein5e-56219
NC_014148:3959960:3979304397930439814242121Planctomyces limnophilus DSM 3776 chromosome, complete genomeDEAD/DEAH box helicase domain protein5e-54213
NC_013440:1580802:1580802158080215829372136Haliangium ochraceum DSM 14365, complete genomeDEAD/DEAH box helicase domain protein5e-49196
NC_007333:810381:8285118285118306462136Thermobifida fusca YX, complete genomehelicase, C-terminal:DEAD/DEAH box helicase, N-terminal1e-47191
NC_013194:3861409:3869550386955038716852136Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeDEAD/DEAH box helicase domain protein1e-47191
NC_007645:3581114:3587257358725735893562100Hahella chejuensis KCTC 2396, complete genomeLhr-like helicase2e-47191
NC_016887:1949927:1974963197496319770952133Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP-dependent helicase3e-47190
NC_009142:5698100:5714083571408357163772295Saccharopolyspora erythraea NRRL 2338, complete genomeputative ATP-dependent helicase5e-47189
NC_003888:7337453:7374208737420873764032196Streptomyces coelicolor A3(2), complete genomeATP-dependent helicase5e-43176
NC_010572:1872840:1898715189871519008532139Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP-dependent helicase1e-42175
NC_009338:3359500:3386977338697733890672091Mycobacterium gilvum PYR-GCK chromosome, complete genomeDEAD/DEAH box helicase3e-39164
NC_009776:157311:1651041651041679352832Ignicoccus hospitalis KIN4/I, complete genomeDEAD/DEAH box helicase domain protein6e-39162
NC_008757:151862:1707931707931728202028Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeDEAD/DEAH box helicase domain protein3e-38160
NC_017275:1189162:1214566121456612173612796Sulfolobus islandicus HVE10/4 chromosome, complete genomeDEAD/DEAH box helicase9e-38159
NC_019942:1211535:1211535121153512142072673Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase1e-37158
NC_013510:1703464:1711029171102917131132085Thermomonospora curvata DSM 43183, complete genomeDEAD/DEAH box helicase domain protein1e-36155
NC_013159:502928:5287135287135308212109Saccharomonospora viridis DSM 43017, complete genomeLhr-like helicase1e-35152
NC_013926:1166454:1168343116834311710152673Aciduliprofundum boonei T469 chromosome, complete genomeDEAD/DEAH box helicase domain protein8e-35149
NC_010525:1314999:1335599133559913384122814Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein3e-34147
NC_000868:757823:7769427769427796802739Pyrococcus abyssi GE5, complete genomelarge helicase-related protein2e-34147
NC_014507:982000:9821929821929848792688Methanoplanus petrolearius DSM 11571 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-33144
NC_019792:3219333:3239661323966132425012841Natronobacterium gregoryi SP2 chromosome, complete genomeLhr-like helicase4e-33143
NC_017954:301562:3015623015623043512790Thermogladius cellulolyticus 1633 chromosome, complete genomeDEAD/DEAH box helicase1e-32142
NC_010525:1177154:1192683119268311954212739Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein1e-32142
NC_015151:1427965:1488726148872614915662841Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeDEAD/DEAH box helicase1e-32142
NC_014537:603564:6331606331606360602901Vulcanisaeta distributa DSM 14429 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein3e-32140
NC_006624:873525:8879228879228906992778Thermococcus kodakarensis KOD1, complete genomelarge helicase-related protein6e-32139
NC_007955:742834:7620857620857649192835Methanococcoides burtonii DSM 6242, complete genomeDEAD/DEAH box helicase-like protein6e-32139
NC_016070:719791:7365697365697393162748Thermoproteus tenax Kra 1, complete genomeATP-dependent helicase2e-30134
NC_012883:1283529:1301281130128113040312751Thermococcus sibiricus MM 739, complete genomeLarge helicase-related protein6e-30132
NC_004547:1837500:1842241184224118470374797Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeprobable ATP-dependent helicase3e-27124
NC_008391:404388:4208294208294253554527Burkholderia cepacia AMMD chromosome 2, complete sequenceDEAD/H associated domain protein6e-27123
NC_009515:474285:4742854742854768852601Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent helicase4e-27123
NC_002935:781172:7993437993438041574815Corynebacterium diphtheriae NCTC 13129, complete genomePutative ATP-dependent helicase9e-27122
NC_015683:732668:7463117463117513205010Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein1e-26122
NC_000854:1342983:1354540135454013572452706Aeropyrum pernix K1, complete genomeputative ATP-dependent helicase2e-26121
NC_010001:902506:9154059154059195504146Clostridium phytofermentans ISDg, complete genomeDEAD/DEAH box helicase domain protein3e-24114
NC_015673:397947:4194264194264243844959Corynebacterium resistens DSM 45100 chromosome, complete genomeATP-dependent DNA helicase4e-24113
NC_011891:2088134:2088134208813420927444611Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein9e-24112
NC_007513:987969:1002947100294710054212475Synechococcus sp. CC9902, complete genomeDEAD/DEAH box helicase-like2e-23111
NC_014160:801618:8016188016188044252808Thermosphaera aggregans DSM 11486 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein4e-23110
NC_019942:1078837:1096394109639410979771584Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase3e-22107
NC_007508:2941889:2959960295996029643544395Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA helicase Lhr2e-21104
NC_015562:1230532:1246389124638912505134125Methanotorris igneus Kol 5 chromosome, complete genomeDEAD/H associated domain-containing protein1e-20102
NC_021184:2936244:2936244293624429407404497Desulfotomaculum gibsoniae DSM 7213, complete genomeLhr-like helicase7e-21102
NC_012590:850130:8675268675268724694944Corynebacterium aurimucosum ATCC 700975, complete genomeputative ATP-dependent DNA helicase2e-20101
NC_008319:1306482:1316964131696413194142451Synechococcus sp. CC9311, complete genomeATP-dependent helicase, DEAD/DEAH box family protein3e-20101
NC_011891:4450031:4476352447635244806114260Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein6e-20100
NC_008536:3601841:3602640360264036072054566Solibacter usitatus Ellin6076, complete genomeDEAD/H associated domain protein8e-2099.8
NC_008095:7499255:7518954751895475215362583Myxococcus xanthus DK 1622, complete genomeATP-dependent helicase, DEAD/DEAH box family3e-1997.8
NC_015723:1998363:1998363199836320010502688Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig1e-1895.9
NC_007164:511171:5318585318585368524995Corynebacterium jeikeium K411, complete genomeputative ATP-dependent DNA helicase2e-1481.6
NC_013967:1590500:1614465161446516168162352Haloferax volcanii DS2 chromosome, complete genomeATP-dependent helicase8e-1479.7
NC_013741:1390823:1408399140839914125114113Archaeoglobus profundus DSM 5631, complete genometranscriptional regulator, XRE family1e-1275.9
NC_008312:5637974:5655409565540956581262718Trichodesmium erythraeum IMS101, complete genomeDEAD/DEAH box helicase-like1e-1275.5
NC_012440:423217:4245494245494269992451Persephonella marina EX-H1, complete genomeATP-dependent rna helicase, dead/deah box family2e-1275.5
NC_016010:65949:6594965949684442496Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster2e-1275.1
NC_007508:64955:6641566415689102496Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative helicase2e-1275.1
NC_013169:1845735:1845735184573518507174983Kytococcus sedentarius DSM 20547, complete genomeATP dependent helicase, Lhr family4e-1273.9
NC_012803:361127:3561023561023611305029Micrococcus luteus NCTC 2665, complete genome2e-1172
NC_019977:1897556:1897556189755619003602805Methanomethylovorans hollandica DSM 15978, complete genomehelicase family protein with metal-binding cysteine cluster3e-1170.9
NC_003106:5970:5970597088192850Sulfolobus tokodaii str. 7, complete genomehypothetical protein2e-0965.5
NC_007907:761486:7871527871527897192568Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0965.5
NC_007164:2261644:2283522228352222858762355Corynebacterium jeikeium K411, complete genomeputative helicase2e-0861.2
NC_013158:1620761:1641383164138316437852403Halorhabdus utahensis DSM 12940, complete genomeDEAD/DEAH box helicase domain protein2e-0758.5
NC_013216:1442044:1454991145499114614016411Desulfotomaculum acetoxidans DSM 771, complete genomeDEAD/DEAH box helicase domain protein2e-0758.2
NC_007958:2370619:237593723759372376530594Rhodopseudomonas palustris BisB5, complete genomehypothetical protein3e-0757.8
NC_021184:3793285:3815341381534138198614521Desulfotomaculum gibsoniae DSM 7213, complete genomehelicase family protein with metal-binding cysteine cluster3e-0757.8
NC_013172:2877722:2901164290116429036652502Brachybacterium faecium DSM 4810, complete genomehelicase family protein with metal-binding cysteine cluster4e-0757.4
NC_011663:1500772:1510636151063615119371302Shewanella baltica OS223 chromosome, complete genomeDEAD/DEAH box helicase1e-0655.5
NC_012856:2815797:2822604282260428279165313Ralstonia pickettii 12D chromosome 1, complete genomeDEAD/DEAH box helicase domain protein2e-0655.1
NC_010162:11387949:1139139111391391113976906300Sorangium cellulosum 'So ce 56', complete genomehypothetical protein4e-0654.3
NC_013595:8603188:8633748863374886389195172Streptosporangium roseum DSM 43021, complete genomeDEAD/DEAH box helicase domain protein4e-0653.9
NC_011004:2457778:246344924634492464042594Rhodopseudomonas palustris TIE-1, complete genomeDEAD/DEAH box helicase-like protein7e-0653.1