Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3780095 Pseudomonas mendocina ymp, complete genome

Start: 3780095, End: 3781390, Length: 1296

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:2467219:2488133248813324894281296Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein0842
NC_009656:4527457:4565471456547145667661296Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein0810
NC_009434:3611738:3747709374770937488751167Pseudomonas stutzeri A1501, complete genomebiotin carboxylase0787
NC_007952:3196085:3221085322108532223831299Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein0716
NC_010002:5691968:5702668570266857039721305Delftia acidovorans SPH-1, complete genomehypothetical protein0698
NC_016010:1822212:1844940184494018462381299Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehypothetical protein0697
NC_014910:1200605:1215217121521712165301314Alicycliphilus denitrificans BC chromosome, complete genomehypothetical protein0679
NC_012918:1444333:1455322145532214566711350Geobacter sp. M21 chromosome, complete genomehypothetical protein0651
NC_019673:6259229:6257910625791062592321323Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein8e-169593
NC_014217:2020737:2032636203263620339581323Starkeya novella DSM 506 chromosome, complete genomehypothetical protein3e-167588
NC_015580:1584078:1595958159595815972621305Novosphingobium sp. PP1Y, complete genomehypothetical protein2e-160565
NC_017047:2042346:2053677205367720549841308Rahnella aquatilis HX2 chromosome, complete genomebiotin carboxylase2e-159562
NC_016612:28451:4281242812441281317Klebsiella oxytoca KCTC 1686 chromosome, complete genomebiotin carboxylase2e-159561
NC_008435:2658986:2688888268888826902011314Rhodopseudomonas palustris BisA53, complete genomehypothetical protein8e-155546
NC_007493:1929000:1938711193871119399821272Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencehypothetical protein3e-153541
NC_006370:1810842:1828517182851718297131197Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein5e-140498
NC_007333:39579:7412374123754541332Thermobifida fusca YX, complete genomehypothetical protein2e-129462
NC_007907:761486:7834637834637848061344Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-103374
NC_015172:850802:8525368525368538641329Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomehypothetical protein5e-92338
NC_008639:2545107:2554404255440425557171314Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein5e-86318
NC_016887:1949927:1977092197709219784051314Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP/GTP binding protein7e-25115
NC_009338:3359500:3389067338906733903411275Mycobacterium gilvum PYR-GCK chromosome, complete genomeATP/GTP binding protein4e-24112
NC_010572:1872840:1897387189738718987151329Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP/GTP-binding protein1e-22107
NC_003888:7337453:7372859737285973742081350Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein2e-22107
NC_013159:502928:5273945273945287161323Saccharomonospora viridis DSM 43017, complete genomehypothetical protein3e-20100
NC_008757:151862:1728171728171741271311Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completemethyl-accepting chemotaxis protein7e-1995.5
NC_013440:1624561:1624561162456116259131353Haliangium ochraceum DSM 14365, complete genomeputative ATP/GTP binding protein1e-1894.7
NC_011891:1278199:1297607129760712989321326Anaeromyxobacter dehalogenans 2CP-1, complete genomeputative ATP/GTP binding protein6e-1892.4
NC_013510:1703464:1713110171311017144351326Thermomonospora curvata DSM 43183, complete genomemethyl-accepting chemotaxis protein9e-1891.7
NC_007333:810381:8271898271898285141326Thermobifida fusca YX, complete genomeputative ATP/GTP binding protein6e-1789
NC_014148:3959960:3981418398141839827401323Planctomyces limnophilus DSM 3776 chromosome, complete genomeputative ATP/GTP binding protein2e-1687.4
NC_013440:811780:8117808117808131321353Haliangium ochraceum DSM 14365, complete genomeputative ATP/GTP binding protein2e-1687.4
NC_007645:3581114:3589353358935335906721320Hahella chejuensis KCTC 2396, complete genomeMethyl-accepting chemotaxis protein3e-1686.7
NC_013440:1580802:1579471157947115808051335Haliangium ochraceum DSM 14365, complete genomemethyl-accepting chemotaxis protein8e-1685.1
NC_009142:5698100:5716374571637457176301257Saccharopolyspora erythraea NRRL 2338, complete genomeATP/GTP binding protein2e-1584
NC_013194:3861409:3871682387168238730011320Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completemethyl-accepting chemotaxis protein9e-1375.1
NC_019942:1078837:1099273109927311005021230Aciduliprofundum sp. MAR08-339, complete genomeProtein of unknown function (DUF2791)4e-1066.2
NC_014910:755192:764797764797765249453Alicycliphilus denitrificans BC chromosome, complete genome3e-0860.1