Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3777612 Pseudomonas mendocina ymp, complete genome

Start: 3777612, End: 3780098, Length: 2487

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:2467219:2485638248563824881362499Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein01233
NC_009656:4527457:4566763456676345696272865Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein0923
NC_004578:3193490:3215716321571632183162601Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein0823
NC_010002:5691968:5703969570396957063652397Delftia acidovorans SPH-1, complete genomehypothetical protein4e-157555
NC_007952:3196085:3222380322238032248182439Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein2e-147523
NC_014910:1200605:1213322121332212152201899Alicycliphilus denitrificans BC chromosome, complete genome4e-139496
NC_012918:1444333:1452863145286314553252463Geobacter sp. M21 chromosome, complete genomehypothetical protein6e-130465
NC_016010:1822212:1846235184623518475571323Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehypothetical protein2e-93343
NC_007493:1929000:1936160193616019386972538Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceplasma membrane H+-transporting two-sector ATPase, C subunit3e-87323
NC_019673:6259229:6259229625922962614902262Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-80301
NC_016612:28451:4413244132464412310Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-79297
NC_006370:1810842:1826082182608218283912310Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein3e-75283
NC_015580:1584078:1593435159343515959542520Novosphingobium sp. PP1Y, complete genomeplasma membrane H+-transporting two-sector ATPase, C subunit3e-75283
NC_017047:2042346:2054994205499420573002307Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-73276
NC_008435:2658986:2686492268649226888912400Rhodopseudomonas palustris BisA53, complete genomehypothetical protein3e-71270
NC_014217:2020737:2033955203395520371133159Starkeya novella DSM 506 chromosome, complete genomePeptidoglycan-binding domain 1 protein7e-68259
NC_014500:3175283:3191323319132331927381416Dickeya dadantii 3937 chromosome, complete genomehypothetical protein8e-45182
NC_007333:39579:7545175451795214071Thermobifida fusca YX, complete genomehypothetical protein2e-24114
NC_017075:1869326:1871590187159018735331944Rubrivivax gelatinosus IL144, complete genomehypothetical protein3e-1688.2