Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3772769 Pseudomonas mendocina ymp, complete genome

Start: 3772769, End: 3774139, Length: 1371

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1415962:1429748142974814311211374Pseudomonas syringae pv. syringae B728a, complete genomeTwin-arginine translocation pathway signal0634
NC_015684:2000771:2003782200378220052151434Oligotropha carboxidovorans OM5 chromosome, complete genomemulticopper oxidase2e-67256
NC_011386:3723019:3743311374331137447381428Oligotropha carboxidovorans OM5, complete genomeCumA2e-62239
NC_020126:117799:1438181438181452481431Myxococcus stipitatus DSM 14675, complete genomemulticopper oxidase domain-containing protein1e-61237
NC_015186:2884866:2902967290296729043821416Acidiphilium multivorum AIU301, complete genomemulticopper oxidase1e-54214
NC_015510:8069440:8074404807440480756871284Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomemulticopper oxidase type 36e-49195
NC_016593:981500:99857499857410001601587Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeMulticopper oxidase type 33e-45182
NC_016935:2347691:2370707237070723728152109Paenibacillus mucilaginosus 3016 chromosome, complete genomemulticopper oxidase type 36e-42172
NC_013205:1123280:1159699115969911613961698Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,multicopper oxidase type 35e-42172
NC_015690:1818333:1840836184083618429412106Paenibacillus mucilaginosus KNP414 chromosome, complete genomemulticopper oxidase type 31e-41171
NC_015588:1847500:1876023187602318775761554Isoptericola variabilis 225 chromosome, complete genomemulticopper oxidase type 31e-40168
NC_012691:2146473:2169318216931821707871470Tolumonas auensis DSM 9187, complete genomemulticopper oxidase type 33e-37156
NC_019897:2908971:2936995293699529390762082Thermobacillus composti KWC4 chromosome, complete genomemulticopper oxidase8e-36151
NC_015953:1860946:1875864187586418774351572Streptomyces sp. SirexAA-E chromosome, complete genomemulticopper oxidase type 33e-34146
NC_013223:1090397:1121608112160811230801473Desulfohalobium retbaense DSM 5692, complete genomemulticopper oxidase type 32e-32140
NC_012803:1980955:1980955198095519825201566Micrococcus luteus NCTC 2665, complete genomecopper-resistance protein, CopA family3e-31136
NC_009342:135500:1397411397411412221482Corynebacterium glutamicum R chromosome, complete genomehypothetical protein6e-31135
NC_002935:48687:5943659436609171482Corynebacterium diphtheriae NCTC 13129, complete genomePutative exported multicopper oxidase2e-30134
NC_014831:1906691:1917485191748519191701686Thermaerobacter marianensis DSM 12885 chromosome, complete genomemulticopper oxidase type 32e-30133
NC_013169:474856:4844044844044859691566Kytococcus sedentarius DSM 20547, complete genomepredicted multicopper oxidase4e-30132
NC_021177:2034722:2055048205504820566341587Streptomyces fulvissimus DSM 40593, complete genomeMulticopper oxidase type 37e-30132
NC_014034:2253649:2269161226916122706361476Rhodobacter capsulatus SB1003 chromosome, complete genomemulticopper oxidase family protein8e-27122
NC_010519:1963256:1969449196944919709961548Haemophilus somnus 2336 chromosome, complete genomemulticopper oxidase type 38e-27121
NC_017904:3113000:3121152312115231226241473Mycobacterium sp. MOTT36Y chromosome, complete genomeoxidase1e-25117
NC_013205:1123280:116592411659241166916993Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,multicopper oxidase type 34e-25116
NC_014532:988351:99850199850110002431743Halomonas elongata DSM 2581, complete genomecopper-resistance protein, CopA family7e-25115
NC_009138:1544835:1571982157198215733761395Herminiimonas arsenicoxydans, complete genomeputative oxidase, putative copper oxidase9e-25115
NC_010519:1963256:1972853197285319744571605Haemophilus somnus 2336 chromosome, complete genomemulticopper oxidase type 32e-24114
NC_012808:1979000:1985649198564919870671419Methylobacterium extorquens AM1, complete genomemulticopper oxidase, putative manganese-oxidizing multicopper oxidase5e-24112
NC_010682:1913941:1929390192939019312041815Ralstonia pickettii 12J chromosome 1, complete sequencecopper-resistance protein, CopA family7e-24112
NC_012808:1920500:1934790193479019369582169Methylobacterium extorquens AM1, complete genomeCopper resistance protein A precursor3e-23110
NC_012590:977920:9807799807799824131635Corynebacterium aurimucosum ATCC 700975, complete genomeputative multicopper oxidase2e-23110
NC_013446:2820000:2863977286397728659201944Comamonas testosteroni CNB-2, complete genomecopper-resistance protein, CopA family2e-23110
NC_008782:2857899:2885928288592828873401413Acidovorax sp. JS42, complete genomemulticopper oxidase, type 33e-23109
NC_016943:1810417:181190118119011812686786Blastococcus saxobsidens DD2, complete genomeputative multicopper oxidase (fragment)1e-22108
NC_012483:1408500:1433826143382614358021977Acidobacterium capsulatum ATCC 51196, complete genomecopper resistance protein A9e-23108
NC_012792:385670:3989973989974004121416Variovorax paradoxus S110 chromosome 2, complete genomemulticopper oxidase type 39e-23108
NC_009659:892272:8946278946278965131887Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance protein A9e-23108
NC_008344:1:1567615676172981623Nitrosomonas eutropha C91, complete genomeTwin-arginine translocation pathway signal6e-23108
NC_016589:2824164:2856821285682128581161296Burkholderia sp. YI23 chromosome 1, complete sequencemulticopper oxidase type 36e-23108
NC_009659:1923925:1951802195180219537331932Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance protein A2e-22107
NC_016616:2768053:2792760279276027941691410Dechlorosoma suillum PS chromosome, complete genomeputative multicopper oxidase2e-22107
NC_009138:519965:5427815427815446461866Herminiimonas arsenicoxydans, complete genomeCopper resistance protein A precursor2e-22107
NC_014759:2438492:2477528247752824792221695Marivirga tractuosa DSM 4126 chromosome, complete genomemulticopper oxidase type 32e-22107
NC_008782:1308007:1312375131237513142671893Acidovorax sp. JS42, complete genomecopper-resistance protein, CopA family1e-22107
NC_015410:2258800:2262479226247922638911413Pseudomonas mendocina NK-01 chromosome, complete genomemulticopper oxidase, type 33e-22106
NC_006368:2684358:2684358268435826875523195Legionella pneumophila str. Paris, complete genomehypothetical protein3e-22106
NC_014640:1179382:1189833118983311917371905Achromobacter xylosoxidans A8 chromosome, complete genomecopper resistance protein A9e-22105
NC_009138:1518315:1540204154020415420841881Herminiimonas arsenicoxydans, complete genomecopper resistance protein A precursor like6e-22105
NC_009720:5079048:5090228509022850916311404Xanthobacter autotrophicus Py2, complete genomemulticopper oxidase type 36e-22105
NC_013939:295220:3088833088833103161434Deferribacter desulfuricans SSM1, complete genomemulticopper oxidase6e-22105
NC_017986:3283433:3292987329298732949661980Pseudomonas putida ND6 chromosome, complete genomeCopA family copper resistance protein5e-22105
NC_009620:1531000:1550530155053015518791350Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequencemulticopper oxidase type 32e-21104
NC_010501:1:1686716867188251959Pseudomonas putida W619, complete genomecopper-resistance protein, CopA family1e-21104
NC_010322:1:1762917629195871959Pseudomonas putida GB-1 chromosome, complete genomeCopA family copper resistance protein1e-21104
NC_020156:737063:7664337664337688172385Nonlabens dokdonensis DSW-6, complete genomecopper resistance protein1e-21104
NC_009512:1:1684716847188622016Pseudomonas putida F1, complete genomecopper-resistance protein, CopA family1e-21104
NC_018868:619113:6348506348506366881839Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeputative copper resistance transmembrane protein2e-21103
NC_015733:5955467:5959897595989759618341938Pseudomonas putida S16 chromosome, complete genomeCopA family copper resistance protein3e-21103
NC_011004:1136895:1157668115766811590501383Rhodopseudomonas palustris TIE-1, complete genomemulticopper oxidase type 34e-21103
NC_014041:4335948:4345185434518543476142430Zunongwangia profunda SM-A87 chromosome, complete genomemulticopper oxidase8e-21102
NC_015422:2806832:2834570283457028359821413Alicycliphilus denitrificans K601 chromosome, complete genomemulticopper oxidase type 37e-21102
NC_012988:1280610:1297781129778112998592079Methylobacterium extorquens DM4, complete genomecopper resistance protein A5e-21102
NC_010501:5735656:5738293573829357401101818Pseudomonas putida W619, complete genomecopper-resistance protein, CopA family4e-21102
NC_014315:1744485:1746158174615817475761419Nitrosococcus watsoni C-113 chromosome, complete genomemulticopper oxidase type 34e-21102
NC_012982:711122:7438487438487454461599Hirschia baltica ATCC 49814, complete genomecopper-resistance protein, CopA family9e-21101
NC_008344:1:2328823288251711884Nitrosomonas eutropha C91, complete genomecopper-resistance protein, CopA family protein1e-20101
NC_014414:2491811:2504883250488325067061824Parvularcula bermudensis HTCC2503 chromosome, complete genomecopper-binding protein1e-20101
NC_009439:2427120:2453671245367124554851815Pseudomonas mendocina ymp, complete genomeCopA family copper resistance protein3e-20100
NC_007484:1694738:1711909171190917133271419Nitrosococcus oceani ATCC 19707, complete genomeMulticopper oxidase, type 32e-20100
NC_010794:885500:8885918885918896551065Methylacidiphilum infernorum V4, complete genomeMulticopper oxidase2e-20100
NC_007492:4310828:4310828431082843125461719Pseudomonas fluorescens PfO-1, complete genomeCopper-resistance protein CopA7e-2099
NC_009328:1651812:1656775165677516582381464Geobacillus thermodenitrificans NG80-2 chromosome, complete genomemulticopper oxidase7e-2098.6
NC_016943:1314500:1322407132240713241401734Blastococcus saxobsidens DD2, complete genomeputative Multicopper oxidase8e-2098.6
NC_008599:1291300:1291300129130012928681569Campylobacter fetus subsp. fetus 82-40, complete genomemulticopper oxidase family protein9e-2098.6
NC_018697:1343756:1369140136914013710141875Cycloclasticus sp. P1 chromosome, complete genomeP-ATPase superfamily P-type ATPase copper transporter1e-1998.2
NC_002947:6123608:6131833613183361338422010Pseudomonas putida KT2440, complete genomecopper resistance protein A1e-1998.2
NC_015957:196000:2009072009072023191413Streptomyces violaceusniger Tu 4113 chromosome, complete genomemulticopper oxidase type 32e-1997.8
NC_010170:4800000:4848749484874948506081860Bordetella petrii, complete genomecopper resistance protein A precursor1e-1997.8
NC_009434:3611738:3656827365682736587071881Pseudomonas stutzeri A1501, complete genomecopper resistance protein A1e-1997.8
NC_007404:1388049:1403210140321014048951686Thiobacillus denitrificans ATCC 25259, complete genomeCopper-resistance protein CopA2e-1997.1
NC_014958:514225:5167025167025181471446Deinococcus maricopensis DSM 21211 chromosome, complete genomemulticopper oxidase type 32e-1997.1
NC_015410:2698572:2741426274142627432311806Pseudomonas mendocina NK-01 chromosome, complete genomeCopA family copper resistance protein4e-1996.7
NC_008571:1374496:1388246138824613898531608Gramella forsetii KT0803, complete genomeCotA-like multicopper oxidase5e-1995.9
NC_020210:788639:808533808533809498966Geobacillus sp. GHH01, complete genomeputative multicopper oxidase6e-1995.9
NC_009778:4188000:4214969421496942167921824Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-1995.5
NC_011748:3958572:3973375397337539751981824Escherichia coli 55989, complete genomeCopper resistance protein A precursor8e-1995.5
CU928145:3958572:3973375397337539751981824Escherichia coli 55989 chromosome, complete genomeCopper resistance protein A precursor8e-1995.5
NC_016593:981500:985945985945986910966Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeMulticopper oxidase type 39e-1995.1
NC_009727:766000:7796537796537820642412Coxiella burnetii Dugway 7E9-12, complete genomecopper-resistance protein, CopA family protein2e-1894
NC_015740:2692023:2701015270101527027121698Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completecopper resistance protein A3e-1893.2
NC_014206:2807879:280787928078792808841963Geobacillus sp. C56-T3 chromosome, complete genomemulticopper oxidase type 35e-1892.4
NC_014655:570000:5799145799145821872274Leadbetterella byssophila DSM 17132 chromosome, complete genomemulticopper oxidase type 38e-1892
NC_016818:3986570:4003347400334740049511605Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative multicopper oxidase7e-1892
NC_010943:2465976:2474570247457024764381869Stenotrophomonas maltophilia K279a, complete genomeputative copper resistance protein1e-1791.3
NC_015496:1288377:1301366130136613037802415Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomemulticopper oxidase type 32e-1790.9
NC_020051:31850:4349543495450181524Gloeocapsa sp. PCC 7428 plasmid pGLO7428.02, complete sequencemulticopper oxidase type 32e-1790.9
NC_016026:1224129:1246147124614712480091863Micavibrio aeruginosavorus ARL-13 chromosome, complete genomecopper resistance protein A2e-1790.9
NC_014759:2438492:2484384248438424866842301Marivirga tractuosa DSM 4126 chromosome, complete genomemulticopper oxidase type 33e-1790.1
NC_014041:3633842:3646008364600836481552148Zunongwangia profunda SM-A87 chromosome, complete genomemulticopper oxidase4e-1789.7
NC_013222:299683:3241703241703265062337Robiginitalea biformata HTCC2501, complete genomeCopper resistance protein CopA6e-1789
NC_015638:328601:3416783416783439092232Lacinutrix sp. 5H-3-7-4 chromosome, complete genomemulticopper oxidase type 32e-1687
NC_009441:3597020:3647739364773936503542616Flavobacterium johnsoniae UW101 chromosome, complete genomemulticopper oxidase, type 33e-1686.7
NC_009720:3210387:3219856321985632213761521Xanthobacter autotrophicus Py2, complete genomeBilirubin oxidase4e-1686.7
NC_008570:4009762:4030504403050440321531650Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeblue copper oxidase CueO5e-1685.9
NC_016147:586433:6066426066426084471806Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative copper resistance protein7e-1685.5
NC_015177:1859879:1876259187625918785292271Pedobacter saltans DSM 12145 chromosome, complete genomemulticopper oxidase type 34e-1583.2
NC_016605:272231:2912772912772927101434Pediococcus claussenii ATCC BAA-344 chromosome, complete genomemulticopper oxidase mco4e-1583.2
NC_013744:252702:2618872618872631461260Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completemulticopper oxidase type 31e-1481.3
NC_007777:2964500:296691329669132967794882Frankia sp. CcI3, complete genomemulticopper oxidase, type 32e-1480.9
NC_016001:1015164:1017667101766710199192253Flavobacterium branchiophilum, complete genomeCopper-resistance protein CopA family2e-1480.5
NC_015428:2291430:2291881229188122933951515Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeBilirubin oxidase6e-1479.3
NC_003911:3864852:3873719387371938753801662Silicibacter pomeroyi DSS-3, complete genomemuticopper oxidase domain protein1e-1274.7
NC_010170:4800000:4827381482738148288411461Bordetella petrii, complete genomeputative multicopper oxidase2e-1067.4
NC_019757:4293000:4310994431099443120191026Cylindrospermum stagnale PCC 7417, complete genomeputative multicopper oxidase3e-1067
NC_008726:3858209:3858209385820938607792571Mycobacterium vanbaalenii PYR-1, complete genomemulticopper oxidase, type 35e-1066.2
NC_008010:449652:4645044645044660841581Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencemulticopper oxidase, type 35e-1065.9
NC_014377:1512217:1528668152866815303591692Thermosediminibacter oceani DSM 16646 chromosome, complete genomeBilirubin oxidase7e-0962.4
NC_015666:415007:4294254294254305971173Halopiger xanaduensis SH-6 chromosome, complete genomemulticopper oxidase type 23e-0860.1
NC_013743:3681235:3697092369709236981981107Haloterrigena turkmenica DSM 5511, complete genomemulticopper oxidase type 32e-0757.8
NC_016943:4692561:4692561469256146951552595Blastococcus saxobsidens DD2, complete genomecopper-containing nitrite reductase1e-0655.1
NC_015224:3820338:3860726386072638621531428Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,repressor protein for FtsI3e-0653.9