Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2478996 Pseudomonas mendocina ymp, complete genome

Start: 2478996, End: 2479898, Length: 903

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2698572:2714287271428727153241038Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein5e-83307
NC_018080:3088866:312235531223553123353999Pseudomonas aeruginosa DK2 chromosome, complete genomecointegrate resolution protein T1e-58226
NC_008463:3168837:318826531882653189263999Pseudomonas aeruginosa UCBPP-PA14, complete genomeCointegrate resolution protein T1e-58226
NC_009656:3127240:3163328316332831643291002Pseudomonas aeruginosa PA7 chromosome, complete genomeTnpT protein9e-53207
NC_017986:5867782:5869312586931258703641053Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-43176
NC_010501:2511887:253323325332332534207975Pseudomonas putida W619, complete genomeTnpT protein5e-31135
NC_013166:1341575:135714613571461358078933Kangiella koreensis DSM 16069, complete genomeTn4652, cointegrate resolution protein T, putative3e-27122
NC_018080:3055358:306589330658933066711819Pseudomonas aeruginosa DK2 chromosome, complete genomeTnpT protein9e-27120
NC_016616:2768053:2779028277902827801041077Dechlorosoma suillum PS chromosome, complete genomePlasmid replication region DNA-binding N-term protein1e-26120
NC_009659:1923925:1965881196588119668821002Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein T1e-1997.4
NC_008750:2332000:2339787233978723409591173Shewanella sp. W3-18-1, complete genomecointegrate resolution protein T2e-1996.7
NC_009138:1583988:1598232159823215992811050Herminiimonas arsenicoxydans, complete genomeputative Cointegrate resolution protein T9e-1994.4
NC_018080:3088866:309535430953543095530177Pseudomonas aeruginosa DK2 chromosome, complete genomeTn4652, cointegrate resolution protein T3e-1892.8
NC_009138:1518315:1528429152842915294511023Herminiimonas arsenicoxydans, complete genomeunknown prophage; integrase-like protein (cointegrate resolution protein T)3e-1892.8
NC_009659:1984980:198997719899771990795819Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein T1e-1790.9
NC_009659:1984980:1988793198879319898271035Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein T2e-1789.7
NC_011662:2320100:2365386236538623664741089Thauera sp. MZ1T, complete genomecointegrate resolution protein T2e-1789.7
NC_010943:2465976:2478399247839924794511053Stenotrophomonas maltophilia K279a, complete genomeputative transposon cointegrate resolution protein2e-1480.1
NC_007508:2756945:2769101276910127701561056Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative cointegrate resolution protein T2e-1377
NC_007507:101887:1029121029121039791068Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,cointegrate resolution protein T (fragment)5e-1375.1
NC_010170:3944228:397218139721813972951771Bordetella petrii, complete genomehypothetical protein4e-1272.4
NC_020829:2754203:277921427792142779516303Pseudomonas denitrificans ATCC 13867, complete genomecointegrate resolution protein T3e-1066.2
NC_009438:212476:215929215929216621693Shewanella putrefaciens CN-32 chromosome, complete genomecointegrate resolution protein T7e-0961.6