Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2473522 Pseudomonas mendocina ymp, complete genome

Start: 2473522, End: 2473962, Length: 441

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009668:529175:548259548259548762504Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencetransmembrane protein6e-34142
NC_018643:320197:324766324766325185420Alpha proteobacterium HIMB5 chromosome, complete genomeSNARE-like domain protein3e-31133
NC_009943:1637582:164302216430221643462441Candidatus Desulfococcus oleovorans Hxd3, complete genomemembrane protein-like protein1e-27121
NC_002939:360462:383605383605384051447Geobacter sulfurreducens PCA, complete genomehypothetical protein7e-24108
NC_012880:1127997:114442011444201144851432Dickeya dadantii Ech703, complete genomehypothetical protein6e-1992.8
NC_011894:6888562:690418569041856904667483Methylobacterium nodulans ORS 2060, complete genomeSNARE associated Golgi protein8e-1992.4
NC_013592:3618248:361987936198793620307429Dickeya dadantii Ech586, complete genomehypothetical protein2e-1684.7
NC_002977:652481:671252671252671680429Methylococcus capsulatus str. Bath, complete genomehypothetical protein4e-1373.6
NC_005085:3116514:312246331224633123029567Chromobacterium violaceum ATCC 12472, complete genomeprobable transmembrane protein4e-1063.5
NC_014933:1023486:103089910308991031378480Bacteroides helcogenes P 36-108 chromosome, complete genomeSNARE associated Golgi protein-like protein2e-0858.2
NC_021182:1654903:165752016575201658143624Clostridium pasteurianum BC1, complete genomeputative membrane-associated protein7e-0752.8
NC_006832:252952:278422278422278850429Ehrlichia ruminantium str. Welgevonden, complete genomehypothetical protein1e-0652
NC_006831:250074:275291275291275719429Ehrlichia ruminantium str. Gardel, complete genomehypothetical protein1e-0652
NC_005295:272708:298429298429298857429Ehrlichia ruminantium str. Welgevonden, complete genomeputative integral membrane protein1e-0652
NC_016776:66223:853138531385789477Bacteroides fragilis 638R, complete genomeputative transmembrane protein2e-0651.6
NC_006347:70607:896988969890174477Bacteroides fragilis YCH46, complete genomeputative integral membrane protein2e-0651.6
NC_003228:76140:973479734797823477Bacteroides fragilis NCTC 9343, complete genomeputative transmembrane protein2e-0651.6
NC_004663:4137501:415069241506924151171480Bacteroides thetaiotaomicron VPI-5482, complete genomeconserved hypothetical protein, putative integral membrane protein3e-0650.8
NC_014650:3589604:359075635907563591352597Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein4e-0650.4
NC_015660:3643370:364576736457673646363597Geobacillus thermoglucosidasius C56-YS93 chromosome, completehypothetical protein4e-0650.4