Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2458481 Pseudomonas mendocina ymp, complete genome

Start: 2458481, End: 2458681, Length: 201

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2698572:273825427382542738430177Pseudomonas mendocina NK-01 chromosome, complete genomeheavy metal transport/detoxification protein1e-25114
NC_009512:27783:313843138431584201Pseudomonas putida F1, complete genomeHeavy metal transport/detoxification protein1e-1685.1
NC_010322:29983:321663216632357192Pseudomonas putida GB-1 chromosome, complete genomeheavy metal transport/detoxification protein4e-1580.1
NC_010501:30000:314043140431595192Pseudomonas putida W619, complete genomeHeavy metal transport/detoxification protein4e-1580.1
NC_009620:1531000:154802915480291548250222Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceheavy metal transport/detoxification protein2e-0754.3
NC_016593:981500:997369997369997572204Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeCopper chaperone copZ7e-0752.8
NC_009439:918534:937054937054937305252Pseudomonas mendocina ymp, complete genomeheavy metal transport/detoxification protein8e-0752.4