Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2441715 Pseudomonas mendocina ymp, complete genome

Start: 2441715, End: 2441987, Length: 273

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010694:436500:437031437031437303273Erwinia tasmaniensis, complete genomehypothetical protein2e-32137
NC_009837:92000:923469234692630285Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein1e-27121
NC_010678:642769:644928644928645191264Ralstonia pickettii 12J chromosome 2, complete sequencetranscriptional regulator, CopG family1e-27121
NC_009787:17344:256302563025908279Escherichia coli E24377A plasmid pETEC_35, complete sequenceCopG family protein2e-27121
NC_016860:4024000:403777140377714038055285Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-27120
NC_019940:2098902:210856321085632108832270Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator5e-27119
NC_004851:157675:177513177513177797285Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein1e-25115
NC_020829:1:361523615236424273Pseudomonas denitrificans ATCC 13867, complete genomeCopG family transcriptional regulator2e-22104
NC_011274:4538722:454509645450964545344249Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-0961.6
NC_010102:4745949:474890647489064749154249Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0961.2
NC_011205:4718239:472461347246134724861249Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853AraC family transcriptional regulator2e-0961.2
NC_011294:4560902:456727645672764567524249Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-0961.2
NC_016831:4517850:452442445244244524672249Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0961.2
NC_004547:442927:466558466558466815258Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid-related protein3e-0960.8
NC_013971:3296272:330262933026293302877249Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid-like protein3e-0960.5
NC_009436:522649:544357544357544605249Enterobacter sp. 638, complete genomeCopG family transcriptional regulator3e-0960.5
NC_013961:441719:468423468423468671249Erwinia amylovora, complete genomeUncharacterized protein y4kO3e-0960.5
NC_020063:528296:547722547722547970249Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator4e-0856.6