Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2428775 Pseudomonas mendocina ymp, complete genome

Start: 2428775, End: 2429782, Length: 1008

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008095:7499255:7516316751631675173681053Myxococcus xanthus DK 1622, complete genomehypothetical protein6e-96350
NC_009952:2752500:2752527275252727535551029Dinoroseobacter shibae DFL 12, complete genomehypothetical protein7e-90330
NC_007513:987969:100750310075031008489987Synechococcus sp. CC9902, complete genomeexonuclease3e-83308
NC_008319:1306482:1314000131400013150551056Synechococcus sp. CC9311, complete genomepredicted exonuclease involved in mRNA processing3e-83308
NC_014820:71565:9358793587946301044Cenarchaeum symbiosum A, complete genomeexonuclease of the beta-lactamase fold8e-1684.7
NC_003413:603157:617011617011617955945Pyrococcus furiosus DSM 3638, complete genomehypothetical mRNA 3'-end processing factor7e-1168.2
NC_009440:79263:120179120179121162984Metallosphaera sedula DSM 5348 chromosome, complete genomeRNA procession exonuclease-like protein1e-1067.8
NC_008698:560529:577404577404578357954Thermofilum pendens Hrk 5, complete genomebeta-lactamase domain protein1e-1067.8
NC_012589:1917421:191742119174211918407987Sulfolobus islandicus L.S.2.15, complete genomehypothetical protein2e-1067.4
NC_016745:2785346:2785346278534627867131368Oceanimonas sp. GK1 chromosome, complete genomebeta-lactamase domain-containing protein8e-0651.6