Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2427120 Pseudomonas mendocina ymp, complete genome

Start: 2427120, End: 2428778, Length: 1659

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015723:1998363:1996693199669319983661674Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig0717
NC_014148:4037357:4055204405520440569581755Planctomyces limnophilus DSM 3776 chromosome, complete genomeATP dependent DNA ligase1e-142506
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent2e-132473
NC_009952:2752500:2754445275444527560491605Dinoroseobacter shibae DFL 12, complete genomeDNA ligase9e-128457
NC_007513:987969:1005424100542410070881665Synechococcus sp. CC9902, complete genomeDNA ligase7e-110398
NC_008319:1306482:1315066131506613167631698Synechococcus sp. CC9311, complete genomepossible ATP-dependent DNA ligase3e-107389
NC_014923:79370:7937079370809711602Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase2e-85317
NC_013849:19404:1940419404210711668Ferroglobus placidus DSM 10642 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl15e-35149
NC_019977:1649546:1671185167118516728701686Methanomethylovorans hollandica DSM 15978, complete genomeATP-dependent DNA ligase I2e-34147
NC_011529:1375920:1390140139014013918281689Thermococcus onnurineus NA1, complete genomethermostable DNA ligase2e-33144
NC_000868:500249:5140035140035156821680Pyrococcus abyssi GE5, complete genomeDNA ligase5e-32139
NC_003413:1521080:1525737152573715274221686Pyrococcus furiosus DSM 3638, complete genomeDNA ligase7e-32139
NC_013131:1593840:1622309162230916238921584Catenulispora acidiphila DSM 44928, complete genomeDNA ligase I, ATP-dependent Dnl11e-30134
NC_009440:79263:1211851211851229811797Metallosphaera sedula DSM 5348 chromosome, complete genomeATP-dependent DNA ligase2e-30134
NC_015320:470988:5005855005855022551671Archaeoglobus veneficus SNP6 chromosome, complete genomeDNA ligase9e-30132
NC_005877:665092:6908376908376926091773Picrophilus torridus DSM 9790, complete genomeDNA ligase1e-28128
NC_000917:532500:5600425600425617121671Archaeoglobus fulgidus DSM 4304, complete genomeDNA ligase (lig)2e-27124
NC_014222:186876:2024822024822042751794Methanococcus voltae A3 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl11e-26122
NC_009975:1565865:1583851158385115855721722Methanococcus maripaludis C6, complete genomeDNA ligase I, ATP-dependent Dnl13e-25117
NC_016885:2091918:2091918209191820936721755Pyrobaculum oguniense TE7 chromosome, complete genomeDNA ligase I4e-25116
NC_017954:1:24924920511803Thermogladius cellulolyticus 1633 chromosome, complete genomeATP-dependent DNA ligase2e-23110
NC_016645:1909507:1928088192808819297791692Pyrobaculum sp. 1860 chromosome, complete genomeDNA ligase2e-22107
NC_009515:616432:6257866257866274411656Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent DNA ligase, Cdc94e-22106
NC_020389:1936000:1947325194732519490641740Methanosarcina mazei Tuc01, complete genomeATP-dependent DNA ligase7e-22105
NC_006361:5546232:5549367554936755509381572Nocardia farcinica IFM 10152, complete genomeDNA ligase1e-1998.6
NC_014820:1057826:1077557107755710792901734Cenarchaeum symbiosum A, complete genomeATP-dependent DNA ligase2e-1997.4
NC_009464:300422:3044383044383061441707Uncultured methanogenic archaeon RC-I, complete genomeATP-dependent DNA ligase3e-1997.4
NC_014374:1072218:1177223117722311790461824Acidilobus saccharovorans 345-15 chromosome, complete genomeATP-dependent DNA ligase1e-1895.1
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase6e-1582.8
NC_011881:1:6008600870421035Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeATP dependent DNA ligase1e-1378.6
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein2e-1377.4
NC_014830:3870000:3891964389196438933641401Intrasporangium calvum DSM 43043 chromosome, complete genomeATP dependent DNA ligase2e-1274.7
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase2e-1274.3
NC_008271:140846:140846140846141817972Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceATP-dependent DNA ligase2e-1274.3
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein3e-1273.9
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB3e-1273.9
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase3e-1273.9
NC_015675:4442000:446120844612084462071864Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP dependent DNA ligase6e-1272.8
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein8e-1169.3
NC_014923:3930669:394222939422293943092864Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase1e-1068.9
NC_014376:1472304:151207015120701512993924Clostridium saccharolyticum WM1 chromosome, complete genomeATP dependent DNA ligase2e-1067.8
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase6e-1066.2
NC_015416:2723189:274416427441642745111948Methanosaeta concilii GP-6 chromosome, complete genomeDNA polymerase LigD7e-1065.9
NC_006322:1507411:150947515094751510284810Bacillus licheniformis ATCC 14580, complete genomeDNA ligase1e-0965.1
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0964.3
NC_017955:3670670:3671121367112136721941074Modestobacter marinus, complete genomeATP-dependent DNA ligase6e-0962.8
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase2e-0861.6
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase1e-0861.6
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase1e-0861.6
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein8e-0859.3
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase1e-0758.9
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module2e-0758.2
NC_007964:4157500:4176259417625941773641106Nitrobacter hamburgensis X14, complete genome2e-0758.2
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D3e-0757
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D5e-0756.6
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD9e-0755.8
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase1e-0655.1
NC_004463:5110709:511634551163455116887543Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase1e-0655.1
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D3e-0653.9
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D6e-0653.1
NC_002678:6608697:662255766225576623438882Mesorhizobium loti MAFF303099, complete genomesimilar to ATP-dependent DNA ligase6e-0653.1
NC_004463:8401060:845029484502948450881588Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase7e-0652.8