Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1333427 Pseudomonas mendocina ymp, complete genome

Start: 1333427, End: 1334395, Length: 969

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011770:2499432:251393425139342514902969Pseudomonas aeruginosa LESB58, complete genomehypothetical protein4e-169593
NC_015740:2407500:242202624220262422994969Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein5e-164577
NC_010322:5293652:530097653009765301944969Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein6e-164577
NC_018080:2288700:231615123161512317119969Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein4e-158557
NC_015379:908904:957974957974958942969Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Hypothetical protein3e-153541
NC_015422:3184823:319917631991763200150975Alicycliphilus denitrificans K601 chromosome, complete genomephage/plasmid-like protein1e-128459
NC_009138:1843998:186437518643751865334960Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein in putative prophage region1e-123442
NC_012791:651480:6595596595596605871029Variovorax paradoxus S110 chromosome 1, complete genomephage/plasmid-related protein TIGR032993e-123441
NC_013446:1648556:169860316986031699586984Comamonas testosteroni CNB-2, complete genomehypothetical protein2e-121435
NC_017506:1100679:111552511155251116487963Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein4e-118424
NC_017506:1222000:123237312323731233335963Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein3e-117421
NC_008782:2568027:260381526038152604804990Acidovorax sp. JS42, complete genomehypothetical protein7e-117420
NC_018012:598724:598724598724599695972Thiocystis violascens DSM 198 chromosome, complete genomephage/plasmid-like protein1e-114413
NC_011000:2732330:277401227740122774980969Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-113408
NC_007651:3064530:313321731332173134185969Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-112405
NC_007651:72952:128786128786129754969Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-112404
NC_011000:1262324:130899113089911309959969Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-111402
NC_018691:3525430:355518235551823556153972Alcanivorax dieselolei B5 chromosome, complete genomePhage/plasmid-related protein TIGR032992e-111402
NC_009076:3564500:359942335994233600391969Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein4e-109394
NC_014153:3084356:309988330998833100818936Thiomonas intermedia K12 chromosome, complete genomephage/plasmid-related protein TIGR032998e-109393
NC_007434:3973145:399420339942033995168966Burkholderia pseudomallei 1710b chromosome I, complete sequencehypothetical protein2e-108392
NC_015381:1588742:160658016065801607545966Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-108391
NC_008542:197500:225532225532226500969Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein6e-108390
NC_009659:1050532:111380111138011114757957Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein6e-106384
NC_016147:2337244:235722323572232358179957Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein4e-105381
NC_007969:2885249:288663528866352887627993Psychrobacter cryohalolentis K5, complete genomehypothetical protein5e-104377
NC_009138:668000:689761689761690717957Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein, protein highly conserved in Pseudomonas putida with amidotransferase domain; similar to ACIAD2801 of Acinetobacter5e-104377
NC_005085:1269787:127822512782251279190966Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein9e-104376
NC_015424:3520783:352078335207833521733951Aeromonas veronii B565 chromosome, complete genomephage/plasmid-like protein1e-101369
NC_008570:1143578:118584111858411186791951Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-101369
NC_012691:2476223:250265625026562503606951Tolumonas auensis DSM 9187, complete genomephage/plasmid-related protein TIGR032992e-101369
NC_007298:1759881:178014017801401781096957Dechloromonas aromatica RCB, complete genomehypothetical protein3e-100365
NC_012559:768939:777036777036777989954Laribacter hongkongensis HLHK9, complete genomehypothetical protein7e-98357
NC_016002:2946702:296229129622912963247957Pseudogulbenkiania sp. NH8B, complete genomephage/plasmid-like protein2e-97355
NC_008757:206036:212963212963213877915Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completehypothetical protein2e-75282
NC_008786:4070753:407593540759354076873939Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein1e-68260
NC_012559:1301988:130767513076751308253579Laribacter hongkongensis HLHK9, complete genomehypothetical protein4e-41169
NC_013720:5769910:578253757825375783520984Pirellula staleyi DSM 6068, complete genomephage/plasmid-related protein TIGR032992e-31136
NC_013947:3785332:3839105383910538402921188Stackebrandtia nassauensis DSM 44728 chromosome, complete genomephage/plasmid-related protein TIGR032992e-23110
NC_020209:3874844:390183339018333902537705Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-23109
NC_015578:3410367:343391034339103434833924Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein4e-21102
NC_007760:4055860:407798540779854078962978Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein5e-21102
NC_013037:2906730:2918006291800629190581053Dyadobacter fermentans DSM 18053, complete genomephage/plasmid-related protein TIGR032991e-20100
NC_009441:3522519:3531591353159135326641074Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein1e-1997.4
NC_014655:130636:1646931646931657661074Leadbetterella byssophila DSM 17132 chromosome, complete genomephage/plasmid-related protein tigr032992e-1893.6
NC_019904:3749160:3753671375367137547441074Echinicola vietnamensis DSM 17526 chromosome, complete genomephage/plasmid-like protein1e-1790.9
NC_013037:1072266:1101975110197511030271053Dyadobacter fermentans DSM 18053, complete genomephage/plasmid-related protein TIGR032992e-1789.7
NC_017030:5558429:561237256123725613184813Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein2e-1686.7
NC_013131:10413240:104200061042000610420995990Catenulispora acidiphila DSM 44928, complete genomephage/plasmid-related protein TIGR032994e-1685.5
NC_015379:908904:938158938158938403246Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Hypothetical protein6e-1581.6
NC_015381:1318818:132442313244231325340918Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-1377.8
NC_014815:6616500:669751166975116698500990Micromonospora sp. L5 chromosome, complete genomephage/plasmid-related protein tigr032998e-1271.6
NC_014931:4210029:422195242219524222191240Variovorax paradoxus EPS chromosome, complete genome1e-1170.9
NC_015434:2438202:245399524539952454984990Verrucosispora maris AB-18-032 chromosome, complete genomephage/plasmid-like protein tigr032995e-1168.9
NC_008278:2972323:2992444299244429935261083Frankia alni ACN14a, complete genomehypothetical protein; putative coiled-coil domain7e-1168.2
NC_009256:1282793:128951612895161289971456Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein3e-1066.2
NC_016109:5768000:578507957850795786062984Kitasatospora setae KM-6054, complete genomehypothetical protein5e-0962.4
NC_008699:1673181:1678648167864816796521005Nocardioides sp. JS614, complete genomehypothetical protein2e-0860.1
NC_019673:1988853:202032220203222021314993Saccharothrix espanaensis DSM 44229 complete genomePhage/plasmid-related protein2e-0860.1
NC_011145:1732499:174812017481201748422303Anaeromyxobacter sp. K, complete genomehypothetical protein2e-0756.6
NC_008703:31500:4424144241452751035Mycobacterium sp. KMS plasmid pMKMS01, complete sequenceconserved hypothetical protein8e-0755.1
NC_014811:166389:1787541787541797881035Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequencephage/plasmid-related protein TIGR032992e-0653.9