Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1330538 Pseudomonas mendocina ymp, complete genome

Start: 1330538, End: 1330783, Length: 246

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:2288700:231214223121422312387246Pseudomonas aeruginosa DK2 chromosome, complete genomeXRE family transcriptional regulator3e-27120
NC_015379:908904:937726937726937971246Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, Cro/Ci family1e-26118
NC_010322:4623867:467058446705844670829246Pseudomonas putida GB-1 chromosome, complete genomeXRE family transcriptional regulator1e-25115
NC_010682:460523:491925491925492170246Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, XRE family1e-23108
NC_006351:520500:521079521079521324246Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding regulatory protein6e-22102
NC_006351:520500:522475522475522720246Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding regulatory protein4e-2096.7
NC_007510:3340008:334567233456723345986315Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, XRE family1e-1995.5
NC_008061:2582000:259167425916742591919246Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, XRE family2e-1891.3
NC_008543:2666846:267507026750702675315246Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, XRE family2e-1891.3
NC_007650:2429307:245966124596612459864204Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein5e-1889.7
NC_007650:2429307:245827324582732458473201Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein7e-1785.9
NC_010512:1015557:102764110276411027886246Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, XRE family1e-1685.1
NC_007510:1959883:200793820079382008219282Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, XRE family3e-1684
NC_014500:3097362:313932931393293139574246Dickeya dadantii 3937 chromosome, complete genomehypothetical protein2e-1580.9
NC_012912:1701231:171734517173451717590246Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family2e-1580.9
NC_015677:285896:300214300214300459246Ramlibacter tataouinensis TTB310 chromosome, complete genomeXRE family transcriptional regulator2e-1374.3
NC_013446:1648556:169582916958291696128300Comamonas testosteroni CNB-2, complete genometranscriptional regulator, XRE family7e-1372.8
NC_018691:3041851:306006930600693060359291Alcanivorax dieselolei B5 chromosome, complete genomeputative transcriptional regulator3e-1167.4
NC_010571:4483500:448599644859964486226231Opitutus terrae PB90-1, complete genometranscriptional regulator, XRE family4e-1167
NC_016147:1961000:198513019851301985420291Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehelix-turn-helix domain-containing protein5e-1166.6
NC_010170:2246993:226460422646042264897294Bordetella petrii, complete genomepredicted transcriptional regulator8e-1165.9
NC_012691:2614603:271561827156182715911294Tolumonas auensis DSM 9187, complete genometranscriptional regulator, XRE family7e-1165.9
NC_014910:242845:267842267842268135294Alicycliphilus denitrificans BC chromosome, complete genomehelix-turn-helix domain protein1e-1065.1
NC_014311:3076519:311203031120303112257228Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein2e-1064.7
NC_020829:940692:947744947744947956213Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-1064.7
NC_011662:1017933:102195810219581022257300Thauera sp. MZ1T, complete genometranscriptional regulator, XRE family2e-1064.7
NC_008825:2564965:257084225708422571141300Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-1064.7
NC_006513:1379735:138676813867681387061294Azoarcus sp. EbN1, complete genomehypothetical protein2e-1064.3
NC_007651:3560652:357327135732713573513243Burkholderia thailandensis E264 chromosome I, complete sequenceDNA-binding protein2e-1064.3
NC_010170:4463000:447427744742774474561285Bordetella petrii, complete genomeconserved hypothetical protein, DNA-binding3e-1063.9
NC_010002:2518599:253459725345972534992396Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family3e-1063.9
NC_008740:220642:235926235926236135210Marinobacter aquaeolei VT8, complete genome3e-1063.9
NC_013421:478586:490944490944491180237Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, XRE family3e-1063.5
CP002207:3520874:352970035297003529933234Bacillus atrophaeus 1942, complete genometranscriptional regulator, XRE family protein5e-1063.2
NC_010002:4572573:461371146137114614031321Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family5e-1063.2
NC_014639:3520874:352970035297003529933234Bacillus atrophaeus 1942 chromosome, complete genomeXRE family transcriptional regulator5e-1063.2
NC_010170:4463000:448078044807804481085306Bordetella petrii, complete genomepredicted transcriptional regulator6e-1062.8
NC_009434:695582:749946749946750173228Pseudomonas stutzeri A1501, complete genomeCro/CI family transcriptional regulator7e-1062.8
NC_002488:1638946:164163016416301642004375Xylella fastidiosa 9a5c, complete genomehypothetical protein1e-0962
NC_009656:44500:901009010090321222Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-0961.2
NC_014216:2860342:286928428692842869517234Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family3e-0960.8
NC_007512:771975:795566795566795823258Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family3e-0960.5
NC_009659:2849000:286908228690822869411330Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein4e-0960.1
NC_014844:511552:515402515402515728327Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0960.1
NC_007086:1224867:123552112355211235814294Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein4e-0960.1
NC_003902:3666544:372370637237063723999294Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein4e-0960.1
NC_010943:1332243:135334013533401353636297Stenotrophomonas maltophilia K279a, complete genomeputative HTH transcriptional regulator5e-0959.7
NC_010170:1324758:133623513362351336528294Bordetella petrii, complete genomepredicted transcriptional regulator6e-0959.3
NC_013441:1487058:151371615137161513997282Gordonia bronchialis DSM 43247, complete genomehelix-turn-helix domain protein9e-0958.9
NC_007508:2941889:295324729532472953522276Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein8e-0958.9
NC_008344:1:107501075011052303Nitrosomonas eutropha C91, complete genometranscriptional regulator, XRE family protein8e-0958.9
NC_009674:840000:860115860115860324210Bacillus cytotoxicus NVH 391-98 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0858.2
NC_013132:782846:785123785123785347225Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family2e-0858.2
NC_007951:3631772:364709636470963647395300Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional Regulator, XRE family1e-0858.2
NC_002936:1395432:140162414016241401842219Dehalococcoides ethenogenes 195, complete genomeDNA-binding protein1e-0858.2
NC_013890:103807:108816108816109031216Dehalococcoides sp. GT chromosome, complete genometranscriptional regulator, XRE family1e-0858.2
NC_008826:170609:177087177087177320234Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencesubunit S of type I restriction-modification system1e-0858.2
NC_009455:273519:308492308492308707216Dehalococcoides sp. BAV1 chromosome, complete genomeXRE family transcriptional regulator1e-0858.2
NC_018868:619113:654559654559654795237Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeCro/CI family transcriptional regulator2e-0857.8
NC_020409:1173796:118106611810661181392327Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, XRE family2e-0857.8
NC_007777:1018824:103280610328061033051246Frankia sp. CcI3, complete genometranscriptional regulator, XRE family3e-0857.4
NC_010338:4481356:448954444895444489780237Caulobacter sp. K31, complete genometranscriptional regulator, XRE family3e-0857
NC_011662:2402408:240955324095532409810258Thauera sp. MZ1T, complete genometranscriptional regulator, XRE family3e-0857
NC_004347:4007847:401423640142364014463228Shewanella oneidensis MR-1, complete genometranscriptional regulator, Cro/CI family5e-0856.6
NC_015572:1:100251002510264240Methylomonas methanica MC09 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0856.2
NC_010170:1470755:148805214880521488378327Bordetella petrii, complete genomeputative transcriptional regulator6e-0856.2
NC_014618:1103239:112464711246471124898252Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0856.2
NC_016002:1975000:200038420003842000629246Pseudogulbenkiania sp. NH8B, complete genomeputative transcriptional regulator8e-0855.8
NC_020541:4122852:413357841335784133802225Rhodanobacter sp. 2APBS1, complete genomeputative transcriptional regulator7e-0855.8
NC_015572:4916430:492508549250854925324240Methylomonas methanica MC09 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0755.5
NC_014483:1146682:114946911494691149816348Paenibacillus polymyxa E681 chromosome, complete genomePutative HTH-type transcriptional regulator1e-0755.5
NC_014006:3124818:313237831323783132620243Sphingobium japonicum UT26S chromosome 1, complete genomeXre-family transcriptional regulator1e-0755.5
NC_012808:4137000:413802541380254138288264Methylobacterium extorquens AM1, complete genomehypothetical protein1e-0755.5
NC_016641:2894899:291399229139922914339348Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator1e-0755.5
NC_012668:160357:168333168333168542210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein9e-0855.5
NC_012668:1623350:164392816439281644137210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein9e-0855.5
NC_012668:2258854:228069922806992280908210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein9e-0855.5
NC_014158:1479313:150236015023601502611252Tsukamurella paurometabola DSM 20162 chromosome, complete genometranscriptional regulator, XRE family1e-0755.1
NC_012791:651480:656317656317656589273Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family1e-0755.1
NC_008322:373531:373304373304373534231Shewanella sp. MR-7, complete genometranscriptional regulator, XRE family1e-0755.1
NC_010506:4873487:488892448889244889130207Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, XRE family3e-0753.9
NC_016906:3006748:302502330250233025280258Gordonia polyisoprenivorans VH2 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0753.9
NC_007512:771975:805748805748806065318Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family4e-0753.5
NC_009921:3098271:314273031427303142972243Frankia sp. EAN1pec, complete genometranscriptional regulator, XRE family4e-0753.5
NC_008782:1863853:187684418768441877104261Acidovorax sp. JS42, complete genometranscriptional regulator, XRE family4e-0753.5
NC_015633:2565753:258423625842362584445210Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein4e-0753.5
NC_014963:113015:130839130839131108270Terriglobus saanensis SP1PR4 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0753.1
NC_011365:1103927:110644811064481106699252Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeXRE family transcriptional regulator4e-0753.1
NC_010943:9294:161781617816402225Stenotrophomonas maltophilia K279a, complete genomeputative DNA-binding protein7e-0752.8
NC_009712:334143:364402364402364677276Candidatus Methanoregula boonei 6A8, complete genomeXRE family transcriptional regulator7e-0752.8
NC_016616:2997348:300945030094503009686237Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator8e-0752.4
NC_010125:381711:395573395573395824252Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulatory protein1e-0652
NC_015593:2553500:257074025707402570958219Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete1e-0652
NC_006350:845513:873400873400873708309Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein1e-0652
NC_012792:627500:637235637235637438204Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, XRE family1e-0652
NC_007512:771975:803620803620803925306Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family1e-0651.6
NC_015186:2908387:292159829215982921819222Acidiphilium multivorum AIU301, complete genomeXre family transcriptional regulator4e-0650.4
NC_009434:695582:707878707878708147270Pseudomonas stutzeri A1501, complete genomeXRE family transcriptional regulator4e-0650.4
NC_003155:210240:255270255270255677408Streptomyces avermitilis MA-4680, complete genometranscriptional regulator3e-0650.4
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein3e-0650.4
NC_008358:2638245:269643226964322696641210Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein3e-0650.4
NC_013739:2106662:211189521118952112176282Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family4e-0650.1
NC_016901:5130147:515172851517285151934207Shewanella baltica OS678 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0650.1
NC_009665:5072413:509397950939795094185207Shewanella baltica OS185 chromosome, complete genomeXRE family transcriptional regulator4e-0650.1
NC_009997:5188221:521110652111065211312207Shewanella baltica OS195, complete genometranscriptional regulator, XRE family4e-0650.1
NC_014118:1083492:108753610875361087850315Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family9e-0648.9
NC_018581:3323500:332530533253053325541237Gordonia sp. KTR9 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0548.9