Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1323417 Pseudomonas mendocina ymp, complete genome

Start: 1323417, End: 1324667, Length: 1251

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:2548720:2596893259689325980771185Pseudomonas putida ND6 chromosome, complete genomeouter membrane efflux protein7e-101367
NC_009512:27783:6269462694638781185Pseudomonas putida F1, complete genomeouter membrane efflux protein2e-100366
NC_010322:29983:6347663476647471272Pseudomonas putida GB-1 chromosome, complete genomeouter membrane efflux protein4e-100365
NC_010501:30000:6741067410686811272Pseudomonas putida W619, complete genomeouter membrane efflux protein4e-100365
NC_002947:8394:5071850718519891272Pseudomonas putida KT2440, complete genomecobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC family4e-100365
NC_015740:1291739:1303598130359813048391242Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completecobalt-zinc-cadmium resistance protein CzcC4e-91335
NC_009434:3611738:3697189369718936984301242Pseudomonas stutzeri A1501, complete genomecobalt-zinc-cadmium resistance protein CzcC, putative2e-90333
NC_008782:1917634:1928110192811019294651356Acidovorax sp. JS42, complete genomeouter membrane efflux protein6e-70265
NC_009138:1583988:1587664158766415889621299Herminiimonas arsenicoxydans, complete genomeCobalt-zinc-cadmium resistance protein czcC precursor (Cation efflux system protein czcC)7e-69261
NC_009138:519965:5232805232805245691290Herminiimonas arsenicoxydans, complete genomedivalent cation efflux system periplasmic protein CzcC1e-68260
NC_009659:1984980:2003846200384620051351290Janthinobacterium sp. Marseille chromosome, complete genomecobalt-zinc-cadmium outer membrane resistance protein czcC1e-61237
NC_012968:1594954:1626466162646616277311266Methylotenera mobilis JLW8, complete genomeouter membrane efflux protein1e-61237
NC_014910:242845:2515782515782529031326Alicycliphilus denitrificans BC chromosome, complete genomeouter membrane efflux protein8e-61234
NC_010002:1879220:1906105190610519074361332Delftia acidovorans SPH-1, complete genomeouter membrane efflux protein8e-61234
NC_014323:5051041:5070673507067350719591287Herbaspirillum seropedicae SmR1 chromosome, complete genomecobalt-zinc-cadmium resistance cation efflux system outer membrane protein3e-59229
NC_015733:5909821:594451559445155945135621Pseudomonas putida S16 chromosome, complete genomeCzcC family cobalt/zinc/cadmium efflux transporter outer membrane protein9e-59228
NC_015422:3513689:3533957353395735352581302Alicycliphilus denitrificans K601 chromosome, complete genomeouter membrane efflux protein4e-55215
NC_010170:4800000:4868326486832648696151290Bordetella petrii, complete genomemetal ion efflux outer membrane protein, putative6e-52205
NC_013446:2820000:2835724283572428370011278Comamonas testosteroni CNB-2, complete genomeouter membrane efflux protein2e-51203
NC_008752:2724977:2740441274044127417511311Acidovorax avenae subsp. citrulli AAC00-1, complete genomeouter membrane efflux protein8e-51201
NC_003296:612000:6124006124006137251326Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE COBALT-ZINC-CADMIUM OUTER MEMBRANE RESISTANCE PROTEIN5e-50198
NC_015222:523915:5445795445795460061428Nitrosomonas sp. AL212 chromosome, complete genomeouter membrane efflux protein1e-46187
NC_007958:2370619:2400563240056324018341272Rhodopseudomonas palustris BisB5, complete genomeouter membrane efflux protein1e-37157
NC_009485:7626677:7633328763332876346021275Bradyrhizobium sp. BTAi1 chromosome, complete genomeouter membrane cobalt-zinc-cadmium resistance protein czcC6e-36152
NC_011004:2457778:2488205248820524894761272Rhodopseudomonas palustris TIE-1, complete genomeouter membrane efflux protein1e-34147
NC_009720:4406991:4406991440699144082621272Xanthobacter autotrophicus Py2, complete genomeouter membrane efflux protein3e-34146
NC_009720:670853:6901676901676914831317Xanthobacter autotrophicus Py2, complete genomeouter membrane efflux protein2e-33144
NC_011004:2507566:2529112252911225303831272Rhodopseudomonas palustris TIE-1, complete genomeouter membrane efflux protein2e-33143
NC_002939:2337402:2354577235457723558901314Geobacter sulfurreducens PCA, complete genomemetal ion efflux outer membrane protein family protein, putative4e-26119
NC_002939:2315402:2354577235457723558901314Geobacter sulfurreducens PCA, complete genomemetal ion efflux outer membrane protein family protein, putative4e-26119
NC_011146:2200142:2240273224027322415711299Geobacter bemidjiensis Bem, complete genomeouter membrane efflux protein1e-24114
NC_006368:2684358:2695359269535926966721314Legionella pneumophila str. Paris, complete genomeChemiosmotic efflux system C protein C5e-23108
NC_002942:1109618:1125522112552211268591338Legionella pneumophila subsp. pneumophila str. Philadelphia 1,chemiosmotic efflux system C protein C1e-22107
NC_020126:2299150:2303598230359823049141317Myxococcus stipitatus DSM 14675, complete genomeouter membrane efflux protein2e-22107
NC_002977:2254440:2269135226913522704481314Methylococcus capsulatus str. Bath, complete genomeouter membrane efflux protein2e-21103
NC_012982:711122:7591397591397604251287Hirschia baltica ATCC 49814, complete genomeouter membrane efflux protein7e-21102
NC_016616:915755:9157559157559170021248Dechlorosoma suillum PS chromosome, complete genomeouter membrane protein2e-1997.4
NC_008347:2515921:2533414253341425347001287Maricaulis maris MCS10, complete genomeouter membrane efflux protein1e-1687.8
NC_018868:619113:6410036410036423311329Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeouter membrane efflux protein2e-1687.4
NC_010943:2465976:2486816248681624880931278Stenotrophomonas maltophilia K279a, complete genomeputative cobalt-zinc-cadmium resistance protein2e-1583.6
NC_008347:2515921:2551320255132025526331314Maricaulis maris MCS10, complete genomeouter membrane efflux protein4e-1582.8
NC_009659:1923925:1958319195831919596081290Janthinobacterium sp. Marseille chromosome, complete genomeouter membrane efflux protein5e-1582.8
NC_013894:1194458:1216513121651312177121200Thermocrinis albus DSM 14484 chromosome, complete genomeouter membrane efflux protein4e-1479.7
NC_008345:4107847:4107847410784741091961350Shewanella frigidimarina NCIMB 400, complete genomeouter membrane efflux protein4e-1479.7
NC_016609:5890292:5935933593593359372131281Niastella koreensis GR20-10 chromosome, complete genomeouter membrane efflux protein6e-1479
NC_020541:2191600:2190188219018821916031416Rhodanobacter sp. 2APBS1, complete genomeouter membrane protein2e-1170.9
NC_013730:1572889:1588065158806515893931329Spirosoma linguale DSM 74, complete genomeouter membrane efflux protein3e-1170.1
NC_018697:1343756:1385862138586213871721311Cycloclasticus sp. P1 chromosome, complete genomeCobalt/zinc/cadmium efflux RND transporter,outermembrane protein8e-1168.6
NC_016147:623666:6431416431416442591119Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeouter membrane efflux protein7e-1065.5
NC_014366:588347:6006226006226018601239Gamma proteobacterium HdN1, complete genomepredicted outer membrane efflux protein1e-0964.7
NC_015740:2692023:2696797269679726980831287Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeouter membrane protein3e-0963.5
NC_018697:1343756:1359083135908313602911209Cycloclasticus sp. P1 chromosome, complete genomeOuter membrane efflux protein3e-0963.2
NC_017506:93494:1115221115221126191098Marinobacter adhaerens HP15 chromosome, complete genomeouter membrane efflux protein3e-0963.2
NC_009138:1544835:1570551157055115719691419Herminiimonas arsenicoxydans, complete genomePutative copper resistance-related protein5e-0962.4
NC_015144:47783:5919759197635554359Weeksella virosa DSM 16922 chromosome, complete genomeheavy metal efflux pump, CzcA family6e-0962.4
NC_006672:47610:5890058900601591260Gluconobacter oxydans 621H plasmid pGOX1, complete sequenceRND-type multidrug efflux pump, outer membrane protein9e-0961.6
NC_014733:1573171:1591228159122815926641437Methylovorus sp. MP688 chromosome, complete genomeouter membrane efflux protein2e-0860.8
NC_012969:1574330:1592305159230515937411437Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeouter membrane efflux protein3e-0860.1
NC_007947:1703326:1703326170332617047711446Methylobacillus flagellatus KT, complete genomeRND efflux system, outer membrane lipoprotein, NodT5e-0859.3
NC_007520:2305610:2320746232074623220531308Thiomicrospira crunogena XCL-2, complete genomeOuter membrane efflux protein7e-0858.9
NC_011138:318168:3343263343263355281203Alteromonas macleodii 'Deep ecotype', complete genomeOuter membrane efflux protein8e-0858.5
NC_013851:2441407:2443743244374324450861344Allochromatium vinosum DSM 180 chromosome, complete genometype I secretion outer membrane protein, TolC family2e-0757
NC_016616:2768053:2789813278981327910841272Dechlorosoma suillum PS chromosome, complete genomeouter membrane protein4e-0756.6
NC_008607:11663:2176721767231071341Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequenceouter membrane efflux protein9e-0755.1
NC_020126:6264651:6264651626465162661171467Myxococcus stipitatus DSM 14675, complete genomecation efflux system protein CusC1e-0655.1
NC_013960:1693643:1704390170439017057241335Nitrosococcus halophilus Nc4 chromosome, complete genomeouter membrane efflux protein2e-0653.9
NC_007498:357484:3606473606473620711425Pelobacter carbinolicus DSM 2380, complete genomeouter membrane protein OmpK4e-0652.8
NC_015410:2258800:2261062226106222624621401Pseudomonas mendocina NK-01 chromosome, complete genomeouter membrane efflux protein6e-0652.4
NC_012440:1405879:1417316141731614186891374Persephonella marina EX-H1, complete genomeouter membrane efflux protein7e-0652.4