Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1308712 Pseudomonas mendocina ymp, complete genome

Start: 1308712, End: 1309512, Length: 801

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017506:93494:939259392594650726Marinobacter adhaerens HP15 chromosome, complete genomecation efflux protein1e-86319
NC_007484:1694738:170199517019951702672678Nitrosococcus oceani ATCC 19707, complete genomeCation efflux protein3e-56218
NC_014315:1744485:176055617605561761227672Nitrosococcus watsoni C-113 chromosome, complete genomecation efflux protein4e-56218
NC_013959:826868:860177860177860797621Sideroxydans lithotrophicus ES-1 chromosome, complete genomecation efflux protein5e-51201
NC_011761:2131911:216934321693432169969627Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completecation efflux permease4e-48191
NC_011206:2040000:205738520573852058011627Acidithiobacillus ferrooxidans ATCC 53993, complete genomecation efflux protein4e-48191
NC_012968:1594954:162112316211231621740618Methylotenera mobilis JLW8, complete genomecation efflux protein2e-37156
NC_020911:3475096:347676834767683477472705Octadecabacter antarcticus 307, complete genomeputative cobalt-zinc-cadmium resistance protein czcD4e-36151
NC_014010:1020488:105797310579731058608636Candidatus Puniceispirillum marinum IMCC1322 chromosome, completecation efflux protein1e-35150
NC_012982:711122:767090767090767734645Hirschia baltica ATCC 49814, complete genomecation efflux protein3e-34145
NC_008347:2515921:254243925424392543074636Maricaulis maris MCS10, complete genomecation efflux protein4e-34144
NC_008228:2450700:246767124676712468306636Pseudoalteromonas atlantica T6c, complete genomecation efflux protein7e-34144
NC_015684:2000771:200720420072042007938735Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein9e-34144
NC_009438:236424:249734249734250639906Shewanella putrefaciens CN-32 chromosome, complete genomecation efflux system permease7e-33140
NC_008786:3323167:333059233305923331260669Verminephrobacter eiseniae EF01-2, complete genomecation efflux protein2e-32139
NC_018868:619113:639870639870640424555Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeCo/Zn/Cd efflux system protein1e-31137
NC_015740:2998500:300797130079713008726756Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completecation efflux system permease7e-31134
NC_010519:1963256:198360419836041984218615Haemophilus somnus 2336 chromosome, complete genomecation efflux protein9e-31134
NC_018697:1343756:138347813834781384374897Cycloclasticus sp. P1 chromosome, complete genomeCation efflux system permease1e-30133
NC_009434:3611738:369013436901343691024891Pseudomonas stutzeri A1501, complete genomeCo/Zn/Cd efflux system component9e-30130
NC_007951:3655088:367337336733733674269897Burkholderia xenovorans LB400 chromosome 1, complete sequenceheavy metal efflux pump, CDF family1e-29130
NC_007952:1587500:159737215973721598268897Burkholderia xenovorans LB400 chromosome 2, complete sequenceheavy metal/H+ antiporter, CDF family1e-29130
NC_007951:3655088:366197636619763662872897Burkholderia xenovorans LB400 chromosome 1, complete sequenceheavy metal efflux pump, CDF family1e-29130
NC_007951:1711223:172257317225731723469897Burkholderia xenovorans LB400 chromosome 1, complete sequenceheavy metal/H+ antiporter, CDF family1e-29130
NC_008750:450233:454902454902455798897Shewanella sp. W3-18-1, complete genomecation efflux system permease, putative3e-29129
NC_009438:212476:217342217342218238897Shewanella putrefaciens CN-32 chromosome, complete genomecation efflux system permease3e-29129
NC_009438:236424:240460240460241356897Shewanella putrefaciens CN-32 chromosome, complete genomecation efflux system permease3e-29129
NC_010410:3606826:361593836159383616834897Acinetobacter baumannii AYE, complete genomeputative heavy metal transport/detoxification protein2e-29129
NC_010611:240839:257496257496258392897Acinetobacter baumannii ACICU, complete genomeHeavy metal detoxification protein2e-29129
NC_010410:3606826:368246936824693683365897Acinetobacter baumannii AYE, complete genomeputative Heavy metal transport/detoxification protein2e-29129
NC_011586:268927:319758319758320654897Acinetobacter baumannii AB0057 chromosome, complete genomeheavy metal detoxification protein2e-29129
NC_014836:2919508:645764577353897Desulfurispirillum indicum S5 chromosome, complete genomecation efflux protein4e-28125
NC_014836:2919508:135811358114477897Desulfurispirillum indicum S5 chromosome, complete genomecation efflux protein8e-28124
NC_008740:3520500:355354035535403554436897Marinobacter aquaeolei VT8, complete genomeheavy metal/H+ antiporter, CDF family2e-27123
NC_011901:491783:502059502059502955897Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeCDF family heavy metal/H(+) antiporter3e-27122
NC_008740:3602367:361510936151093616005897Marinobacter aquaeolei VT8, complete genomeheavy metal/H+ antiporter, CDF family5e-26118
NC_017506:93494:9966399663100559897Marinobacter adhaerens HP15 chromosome, complete genomecation efflux system protein3e-25115
NC_017045:1:307030703837768Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,Co/Zn/Cd efflux system protein3e-24112
NC_014655:570000:588388588388589182795Leadbetterella byssophila DSM 17132 chromosome, complete genomecation efflux protein3e-24112
NC_015177:1822000:182213318221331822927795Pedobacter saltans DSM 12145 chromosome, complete genomecation efflux protein4e-24111
NC_015144:124500:141959141959142753795Weeksella virosa DSM 16922 chromosome, complete genomecation efflux protein9e-24110
NC_014041:4335948:433976043397604340560801Zunongwangia profunda SM-A87 chromosome, complete genomeintegral membrane protein2e-23109
NC_020156:737063:784063784063784824762Nonlabens dokdonensis DSW-6, complete genomeCDF family cation efflux protein2e-23109
NC_014759:2438492:244244024424402443234795Marivirga tractuosa DSM 4126 chromosome, complete genomecation efflux protein1e-22106
NC_015638:328601:336083336083336874792Lacinutrix sp. 5H-3-7-4 chromosome, complete genomecation efflux protein8e-22103
NC_016147:623666:638535638535639152618Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative transmembrane protein1e-20100
NC_014221:38000:448204482045608789Truepera radiovictrix DSM 17093 chromosome, complete genomecation efflux protein1e-20100
NC_010170:4800000:485695548569554857566612Bordetella petrii, complete genomeZinc transporter6e-1788.2
NC_011666:1601983:162099316209931621337345Methylocella silvestris BL2, complete genome2e-1375.9
NC_011992:2279752:229620522962052296828624Acidovorax ebreus TPSY, complete genomecation efflux protein4e-1375.5
NC_017986:2548720:257660925766092577514906Pseudomonas putida ND6 chromosome, complete genomecation diffusion facilitator family transporter3e-1169.3
NC_010322:29983:431894318944094906Pseudomonas putida GB-1 chromosome, complete genomecation diffusion facilitator family transporter7e-1167.8
NC_010501:30000:471234712348028906Pseudomonas putida W619, complete genomecation diffusion facilitator family transporter7e-1167.8
NC_009512:27783:424074240743312906Pseudomonas putida F1, complete genomecation diffusion facilitator family transporter7e-1167.8
NC_002947:8394:304313043131336906Pseudomonas putida KT2440, complete genomecobalt/cadmium/zinc transporter, CDF family7e-1167.8
NC_013441:2788806:280538228053822806323942Gordonia bronchialis DSM 43247, complete genomecation diffusion facilitator family transporter3e-1065.9
NC_009806:35990:5759757597586191023Kineococcus radiotolerans SRS30216 plasmid pKRAD01, completecation diffusion facilitator family transporter6e-1064.7
NC_015733:5909821:592456659245665925408843Pseudomonas putida S16 chromosome, complete genomeCDF family cobalt/cadmium/zinc transporter1e-0963.9
NC_013440:3870697:388950238895023890311810Haliangium ochraceum DSM 14365, complete genomecation efflux protein2e-0963.2
NC_013947:2351208:235120823512082352116909Stackebrandtia nassauensis DSM 44728 chromosome, complete genomecation diffusion facilitator family transporter2e-0963.2
NC_007164:2046937:204917320491732049787615Corynebacterium jeikeium K411, complete genomeputative Co/Zn/Cd efflux system component3e-0962.8
NC_017904:4742775:477248847724884773411924Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein5e-0961.6
NC_009138:1583988:159495115949511595865915Herminiimonas arsenicoxydans, complete genomeCobalt-zinc-cadmium resistance protein czcD6e-0961.6
NC_011026:2624775:262743226274322628379948Chloroherpeton thalassium ATCC 35110, complete genomecation diffusion facilitator family transporter7e-0858.2
NC_011567:388358:407650407650408624975Anoxybacillus flavithermus WK1, complete genomeCo/Zn/Cd efflux system component2e-0756.2
NC_014314:69872:856928569286642951Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completecation diffusion facilitator family transporter2e-0756.2
NC_017955:1611037:161525616152561616062807Modestobacter marinus, complete genomecation efflux system protein czcD2e-0653.5
NC_014915:3039639:303963930396393040589951Geobacillus sp. Y412MC52 chromosome, complete genomecation diffusion facilitator family transporter3e-0652.4
NC_009434:3611738:370382237038223704742921Pseudomonas stutzeri A1501, complete genomecation efflux system protein3e-0652.4
NC_009953:188000:198926198926199840915Salinispora arenicola CNS-205 chromosome, complete genomecation diffusion facilitator family transporter4e-0652.4
NC_013722:3022236:3024538302453830255571020Xanthomonas albilineans, complete genomeputative cobalt-zinc-cadmium resistance protein4e-0652
NC_016593:596500:608815608815609762948Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completecation diffusion facilitator family transporter6e-0651.6
NC_006510:591339:605192605192606139948Geobacillus kaustophilus HTA426, complete genomecation efflux transporter6e-0651.6