Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1301233 Pseudomonas mendocina ymp, complete genome

Start: 1301233, End: 1302129, Length: 897

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003919:5056650:5077186507718650793482163Xanthomonas axonopodis pv. citri str. 306, complete genomeepimerase4e-30132
NC_004757:1089057:109204710920471092952906Nitrosomonas europaea ATCC 19718, complete genomeAldose 1-epimerase3e-28125
NC_015566:2957956:296012929601292961004876Serratia sp. AS12 chromosome, complete genomeAldose 1-epimerase8e-25114
NC_011901:2739984:275087727508772751791915Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completealdose 1-epimerase1e-24114
NC_014121:2514544:251984325198432520727885Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealdose 1-epimerase1e-24113
NC_016602:2586044:259238125923812593265885Vibrio furnissii NCTC 11218 chromosome 1, complete sequencealdose 1-epimerase5e-24112
NC_017047:2260118:228732622873262288105780Rahnella aquatilis HX2 chromosome, complete genomealdose 1-epimerase9e-23107
NC_016822:1431200:148281214828121483696885Shigella sonnei 53G, complete genomealdose 1-epimerase3e-22105
NC_016745:3199934:321774732177473218517771Oceanimonas sp. GK1 chromosome, complete genomealdose 1-epimerase9e-1994.4
NC_016513:1924242:194729719472971948115819Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completealdose 1-epimerase7e-1788.2
NC_013416:1588369:161137016113701612188819Aggregatibacter actinomycetemcomitans D11S-1, complete genomealdose 1-epimerase1e-1687.4
NC_015563:1240978:124635412463541247256903Delftia sp. Cs1-4 chromosome, complete genomeAldose 1-epimerase4e-1168.9
NC_007516:124486:158678158678159532855Synechococcus sp. CC9605, complete genomehypothetical protein2e-0653.5