Pre_GI: BLASTP Hits

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Query: NC_009439:1174432:1189194 Pseudomonas mendocina ymp, complete genome

Start: 1189194, End: 1189757, Length: 564

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019902:1681320:168597816859781686559582Thioalkalivibrio nitratireducens DSM 14787, complete genomeZn-dependent hydrolase, glyoxylase9e-61232
NC_014307:2735934:274731727473172747946630Ralstonia solanacearum CFBP2957 chromosome, complete genomemetallo-hydrolase/oxidoreductase1e-40165
NC_006361:2225072:224677322467732247459687Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-33141
NC_010694:2189652:219437121943712195045675Erwinia tasmaniensis, complete genomehypothetical protein1e-1995.9
NC_013739:2057781:207782720778272078483657Conexibacter woesei DSM 14684, complete genomehypothetical protein2e-1479
NC_009664:4347718:435883243588324359491660Kineococcus radiotolerans SRS30216, complete genomebeta-lactamase domain protein2e-1272.4
NC_011884:2551715:257688725768872577759873Cyanothece sp. PCC 7425, complete genomebeta-lactamase domain protein3e-0858.2