Pre_GI: BLASTP Hits

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Query: NC_009439:1075170:1087901 Pseudomonas mendocina ymp, complete genome

Start: 1087901, End: 1088410, Length: 510

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:1144272:115600511560051156430426Pseudomonas mendocina NK-01 chromosome, complete genomeTfp pilus assembly protein FimT-like protein7e-25113
NC_018080:5192264:519901351990135199513501Pseudomonas aeruginosa DK2 chromosome, complete genometype 4 fimbrial biogenesis protein FimT1e-1892
NC_009434:1068281:108007110800711080565495Pseudomonas stutzeri A1501, complete genometype 4 fimbrial biogenesis protein FimT1e-1788.6
NC_007086:1936505:195252419525241953075552Xanthomonas campestris pv. campestris str. 8004, complete genomefimbrial biogenesis protein3e-0858.2
NC_003902:2933121:295714429571442957695552Xanthomonas campestris pv. campestris str. ATCC 33913, completefimbrial biogenesis protein3e-0858.2
NC_010688:1908012:192526019252601925811552Xanthomonas campestris pv. campestris, complete genomePutative type IV pilus assembly protein FimT6e-0857
NC_007645:6049340:605699360569936057526534Hahella chejuensis KCTC 2396, complete genomeTfp pilus assembly protein FimT1e-0652.8
NC_003919:3113343:312715131271513127723573Xanthomonas axonopodis pv. citri str. 306, complete genomepre-pilin like leader sequence3e-0650.8