Pre_GI: BLASTP Hits

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Query: NC_009439:101174:124242 Pseudomonas mendocina ymp, complete genome

Start: 124242, End: 125336, Length: 1095

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:6714545:6732759673275967338591101Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative ABC transporter, periplasmic component7e-141500
NC_021150:4929670:4936824493682449379391116Azotobacter vinelandii CA6, complete genomePolyamine transporter periplasmic protein PotF7e-116417
NC_012560:4929683:4936837493683749379521116Azotobacter vinelandii DJ, complete genomePolyamine transporter periplasmic protein PotF7e-116417
NC_009831:1255995:1257662125766212587621101Shewanella sediminis HAW-EB3, complete genomeextracellular solute-binding protein, family 11e-113410
NC_009512:1025365:1028350102835010294291080Pseudomonas putida F1, complete genomeextracellular solute-binding protein, family 13e-112405
NC_016612:3361802:3379230337923033803421113Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputrescine ABC transporter periplasmic-binding protein4e-110398
NC_002947:4362271:4368119436811943692281110Pseudomonas putida KT2440, complete genomeABC transporter, periplasmic polyamine-binding protein, putative3e-101368
NC_008027:3844355:3863214386321438643171104Pseudomonas entomophila L48, complete genomeABC transporter, periplasmic polyamine-binding protein2e-91336
NC_016830:3697173:3704398370439837055011104Pseudomonas fluorescens F113 chromosome, complete genomeperiplasmic spermidine putrescine-binding protein2e-89329
NC_004129:3123000:3128254312825431293421089Pseudomonas fluorescens Pf-5, complete genomeputrescine ABC transporter, periplasmic putrescine-binding protein3e-89328
NC_015379:3175500:3183989318398931850921104Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative putrescine-binding periplasmic protein precursor7e-89327
NC_004129:3965947:3982527398252739836271101Pseudomonas fluorescens Pf-5, complete genomeputrescine ABC transporter, periplasmic putrescine-binding protein4e-80298
NC_002947:4167500:4241729424172942428321104Pseudomonas putida KT2440, complete genomeperiplasmic polyamine-binding protein, putative1e-77290
NC_020829:940692:9802589802589813701113Pseudomonas denitrificans ATCC 13867, complete genomeextracellular solute-binding protein1e-74280
NC_008781:2981868:3003498300349830046581161Polaromonas naphthalenivorans CJ2, complete genomeextracellular solute-binding protein, family 12e-74279
NC_011666:1923776:1937462193746219385711110Methylocella silvestris BL2, complete genomeextracellular solute-binding protein family 13e-56219
NC_019897:3810000:3812967381296738140371071Thermobacillus composti KWC4 chromosome, complete genomespermidine/putrescine-binding periplasmic protein1e-47191
NC_012914:469117:4691174691174701871071Paenibacillus sp. JDR-2, complete genomeextracellular solute-binding protein family 12e-47190
NC_002505:1507860:1521892152189215229291038Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein3e-47189
NC_009457:1068000:1080309108030910813461038Vibrio cholerae O395 chromosome 2, complete sequencespermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein3e-47189
NC_012578:1465302:1479334147933414803711038Vibrio cholerae M66-2 chromosome I, complete sequencespermidine/putrescine ABC transporter substrate-binding protein3e-47189
NC_012668:2115228:2121142212114221221791038Vibrio cholerae MJ-1236 chromosome 1, complete sequenceputrescine ABC transporter putrescine-binding protein PotF3e-47189
NC_016445:984856:9988879988879999241038Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completespermidine/putrescine transport system substrate-binding protein3e-47189
NC_016944:1504888:1518920151892015199571038Vibrio cholerae IEC224 chromosome I, complete sequencespermidine/putrescine ABC transporter substrate-binding protein3e-47189
NC_013716:1298932:1302979130297913040251047Citrobacter rodentium ICC168, complete genomespermidine/putrescine ABC transporter, substrate-binding protein5e-47188
NC_010498:1995500:2023681202368120247271047Escherichia coli SMS-3-5, complete genomespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein1e-46187
NC_009922:2721343:2741311274131127423571047Alkaliphilus oremlandii OhILAs, complete genomeextracellular solute-binding protein family 16e-45181
NC_009718:1470972:1474505147450514755391035Fervidobacterium nodosum Rt17-B1, complete genomeextracellular solute-binding protein1e-44180
NC_006510:746814:7525867525867536591074Geobacillus kaustophilus HTA426, complete genomespermidine/putrescine ABC transporter (substrate-binding protein)2e-44179
NC_014206:2941575:2955729295572929568021074Geobacillus sp. C56-T3 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-44179
NC_016593:762216:7679087679087689811074Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completespermidine/putrescine-binding periplasmic protein5e-44178
NC_020134:1328302:1342631134263113436891059Clostridium stercorarium subsp. stercorarium DSM 8532, completespermidine/putrescine transport system substarte-binding protein PotD4e-44178
NC_010483:1441614:1463190146319014642001011Thermotoga sp. RQ2, complete genomespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein4e-43175
NC_008312:4358134:4377026437702643780901065Trichodesmium erythraeum IMS101, complete genomeextracellular solute-binding protein, family 15e-43175
NC_007929:111092:1330981330981341831086Lactobacillus salivarius subsp. salivarius UCC118, complete genomeSpermidine/putrescine-binding protein2e-42172
NC_008309:1289370:1310334131033413114191086Haemophilus somnus 129PT, complete genomespermidine/putrescine-binding periplasmic protein4e-42172
NC_010519:1802294:1824678182467818257631086Haemophilus somnus 2336 chromosome, complete genomeextracellular solute-binding protein4e-42172
NC_014221:38000:5405354053551231071Truepera radiovictrix DSM 17093 chromosome, complete genomeextracellular solute-binding protein family 16e-42171
NC_008309:1155218:1155218115521811562551038Haemophilus somnus 129PT, complete genomespermidine/putrescine-binding periplasmic protein1e-41170
NC_002505:1507860:1523041152304115241411101Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein4e-41169
NC_012578:1465302:1480483148048314815831101Vibrio cholerae M66-2 chromosome I, complete sequencespermidine/putrescine ABC transporter substrate-binding protein4e-41169
NC_012668:2115228:2119984211998421210301047Vibrio cholerae MJ-1236 chromosome 1, complete sequenceABC transporter periplasmic spermidine putrescine-binding protein PotD4e-41169
NC_016944:1504888:1520069152006915211001032Vibrio cholerae IEC224 chromosome I, complete sequencespermidine/putrescine transport system substrate-binding protein5e-41168
NC_016445:984856:1000036100003610010671032Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein5e-41168
NC_009457:1068000:1081457108145710825571101Vibrio cholerae O395 chromosome 2, complete sequencespermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein7e-41168
NC_004461:779000:7919067919067929791074Staphylococcus epidermidis ATCC 12228, complete genomepotD protein2e-40167
NC_013173:2305394:2305394230539423064311038Desulfomicrobium baculatum DSM 4028, complete genomeextracellular solute-binding protein family 13e-39162
NC_009053:393700:4134014134014144831083Actinobacillus pleuropneumoniae L20, complete genomespermidine/putrescine-binding periplasmic protein 1 precursor3e-39162
NC_010278:398521:4181284181284192101083Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,spermidine/putrescine-binding periplasmic protein3e-39162
NC_010939:405477:4411834411834422651083Actinobacillus pleuropneumoniae serovar 7 str. AP76, completespermidine/putrescine-binding periplasmic protein 1 precursor3e-38159
NC_009078:74954:8604786047870781032Burkholderia pseudomallei 1106a chromosome II, complete sequenceABC transport system, exported substrate-binding protein1e-34147
NC_007435:1914375:1924940192494019262981359Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative ABC transport system, exported substrate-binding protein1e-34147
NC_007650:84140:9424394243952741032Burkholderia thailandensis E264 chromosome II, complete sequenceputrescine ABC transporter, periplasmic putrescine-binding protein, putative3e-34146
NC_008044:857759:8797618797618807861026Silicibacter sp. TM1040, complete genomeextracellular solute-binding protein, family 14e-34145
NC_020829:4390417:440740144074014408384984Pseudomonas denitrificans ATCC 13867, complete genomeputative periplasmic polyamine binding protein5e-32138
NC_006351:73000:8666886668876991032Burkholderia pseudomallei K96243 chromosome 2, complete sequenceABC transport system, exported substrate-binding protein7e-32138
NC_009075:92210:1059791059791070101032Burkholderia pseudomallei 668 chromosome II, complete sequenceputative ABC transporter, periplasmic solute-binding protein7e-32138
NC_009672:30000:3000930009311631155Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, completeextracellular solute-binding protein1e-30134
NC_016048:1930089:1955292195529219563651074Oscillibacter valericigenes Sjm18-20, complete genomespermidine/putrescine ABC transporter spermidine/putrescine-binding protein1e-29130
NC_016113:1143580:1142327114232711435831257Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceABC transporter substrate-binding protein5e-26119
NC_015385:2135456:2153331215333121543801050Treponema succinifaciens DSM 2489 chromosome, complete genomeextracellular solute-binding protein family 18e-26118
NC_002678:5714000:5723382572338257244641083Mesorhizobium loti MAFF303099, complete genomeABC transporter, binding protein1e-24114
NC_013515:65822:8754687546885951050Streptobacillus moniliformis DSM 12112, complete genomeextracellular solute-binding protein family 12e-24113
NC_008209:253663:2723772723772734831107Roseobacter denitrificans OCh 114, complete genomespermidine/putrescine-binding periplasmic protein, putative8e-1685.1
NC_017059:3404000:3404073340407334052271155Rhodospirillum photometricum DSM 122, complete genomeSpermidine/putrescine-binding periplasmic protein4e-1582.8
NC_016590:548312:5483125483125494121101Burkholderia sp. YI23 chromosome 3, complete sequenceextracellular solute-binding protein1e-1480.9
NC_007492:1193626:1214276121427612154271152Pseudomonas fluorescens PfO-1, complete genomeextracellular solute-binding protein, family 12e-1480.5
NC_020063:2343813:2362308236230823634531146Enterobacteriaceae bacterium strain FGI 57, complete genomespermidine/putrescine-binding periplasmic protein2e-1377
NC_008786:3681847:3690955369095536921061152Verminephrobacter eiseniae EF01-2, complete genomeextracellular solute-binding protein, family 17e-1375.1
NC_008314:477722:5138795138795149041026Ralstonia eutropha H16 chromosome 2, complete sequenceABC-type transporter, periplasmic component: POPT family9e-1374.7
NC_011985:194973:2123562123562133961041Agrobacterium radiobacter K84 chromosome 1, complete genomespermidine/putrescine ABC transporter1e-1274.3
NC_015276:2948923:2954973295497329561241152Marinomonas mediterranea MMB-1 chromosome, complete genomeextracellular solute-binding protein family 11e-1273.9
NC_015559:1478114:1486459148645914876101152Marinomonas posidonica IVIA-Po-181 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1273.6
NC_017150:2290681:2318414231841423195441131Acetobacter pasteurianus IFO 3283-01-42C, complete genometransporter substrate-binding periplasmic protein1e-1067.8
NC_013524:969038:9810049810049822211218Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeextracellular solute-binding protein family 15e-1065.9
NC_018000:1914945:1920839192083919219511113Sinorhizobium fredii USDA 257 chromosome, complete genomeABC transporter substrate-binding protein4e-0962.4
NC_007948:4558000:4600085460008546011341050Polaromonas sp. JS666, complete genomeextracellular solute-binding protein, family 11e-0758.2
NC_016641:1148220:1148220114822011492931074Paenibacillus terrae HPL-003 chromosome, complete genomeABC transporter substrate-binding protein3e-0756.6
NC_014483:5015890:5018463501846350195361074Paenibacillus polymyxa E681 chromosome, complete genomeSpermidine/putrescine-binding periplasmic protein1e-0654.3
NC_007651:3656433:366975336697533670103351Burkholderia thailandensis E264 chromosome I, complete sequenceprobable ABC transporter binding protein1e-0551.6