Pre_GI: BLASTP Hits

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Query: NC_009439:101174:121557 Pseudomonas mendocina ymp, complete genome

Start: 121557, End: 122549, Length: 993

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006351:73000:8293882938839571020Burkholderia pseudomallei K96243 chromosome 2, complete sequenceregulatory protein8e-32137
NC_009075:92210:1022481022481032521005Burkholderia pseudomallei 668 chromosome II, complete sequenceputative transcriptional regulator8e-32137
NC_007651:3656433:3668226366822636692451020Burkholderia thailandensis E264 chromosome I, complete sequencetranscriptional regulator, putative6e-31135
NC_007650:84140:9053790537915531017Burkholderia thailandensis E264 chromosome II, complete sequencehypothetical protein1e-26120
NC_011770:4924127:4961086496108649621051020Pseudomonas aeruginosa LESB58, complete genometranscriptional regulator OruR1e-26120
NC_008463:4743296:4744858474485847458771020Pseudomonas aeruginosa UCBPP-PA14, complete genometranscriptional regulator OruR1e-26120
NC_002516:891000:9057269057269067451020Pseudomonas aeruginosa PAO1, complete genometranscriptional regulator OruR1e-26120
NC_008390:2448379:2449503244950324505401038Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, AraC family2e-23109
NC_012660:5793200:5815075581507558162291155Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family regulatory protein5e-21102
NC_020209:47504:7962979629806361008Pseudomonas poae RE*1-1-14, complete genomeAraC family transcriptional regulator7e-21101
NC_002516:2306776:2306776230677623078101035Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator3e-1995.9
NC_018691:4619245:4644618464461846456521035Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator, AraC family protein8e-1994.7
NC_018697:505915:5090685090685100901023Cycloclasticus sp. P1 chromosome, complete genomeAraC-family transcriptional regulator4e-1789
NC_014259:2948335:2949247294924729503171071Acinetobacter sp. DR1 chromosome, complete genomeAraC family transcriptional regulator7e-1788.2
NC_013510:4484000:4500552450055245016071056Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, AraC family2e-1687
NC_018691:2254566:2259228225922822602921065Alcanivorax dieselolei B5 chromosome, complete genomePutative transcriptional regulator4e-1685.9
NC_008463:4342119:4364836436483643658371002Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable transcriptional regulator8e-1684.7
NC_011770:4542183:4564793456479345657941002Pseudomonas aeruginosa LESB58, complete genomeputative transcriptional regulator9e-1684.7
NC_015376:3320818:3331605333160533326571053Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator, AraC family protein2e-1584
NC_010501:4989455:4998963499896350000001038Pseudomonas putida W619, complete genometranscriptional regulator, AraC family2e-1584
NC_002516:2436304:244856824485682449545978Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator4e-1582.4
NC_010511:6067000:6076192607619260772861095Methylobacterium sp. 4-46 chromosome, complete genomeAraC family transcriptional regulator5e-1582
NC_004129:4596040:4617563461756346185851023Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family1e-1481.3
NC_015136:1101725:1127466112746611284941029Burkholderia sp. CCGE1001 chromosome 1, complete sequenceAraC family transcriptional regulator1e-1481.3
NC_012560:2348202:2371675237167523727211047Azotobacter vinelandii DJ, complete genomeTranscription activator in PHB biosynthesis, AraC family6e-1478.6
NC_021150:2348214:2371687237168723727331047Azotobacter vinelandii CA6, complete genomeTranscription activator in PHB biosynthesis, AraC family6e-1478.6
NC_020829:1840281:1842091184209118431221032Pseudomonas denitrificans ATCC 13867, complete genomeputative regulator3e-1376.3
NC_009078:74954:823408234082975636Burkholderia pseudomallei 1106a chromosome II, complete sequenceregulatory protein7e-1375.1
NC_010623:1961685:2021028202102820220441017Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-1273.9
NC_018691:761560:7629207629207639421023Alcanivorax dieselolei B5 chromosome, complete genomePutative AraC family transcription regulator3e-1273.2
NC_012660:3179980:3185843318584331868591017Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family regulatory protein5e-1272
NC_009075:92210:946159461595127513Burkholderia pseudomallei 668 chromosome II, complete sequencetranscriptional regulator, AraC family7e-1271.6
NC_009952:2752500:2765180276518027662081029Dinoroseobacter shibae DFL 12, complete genomeputative transcriptional regulator1e-1171.2
NC_008702:3375027:3391123339112333922561134Azoarcus sp. BH72, complete genomeputative ornithine utilization regulator1e-1171.2
NC_011894:2125474:213090421309042131221318Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family1e-1170.9
NC_020829:4429435:4441701444170144427711071Pseudomonas denitrificans ATCC 13867, complete genomeAraC family transcriptional regulator1e-1170.9
NC_011894:2503639:251167325116732511990318Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family2e-1170.5
NC_011894:2359128:2371528237152823726161089Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family2e-1170.1
NC_007435:1914375:191647419164741917091618Burkholderia pseudomallei 1710b chromosome II, complete sequenceAraC family regulatory protein3e-1169.7
NC_010506:3585533:3602734360273436038131080Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, AraC family3e-1169.3
NC_011757:4293000:4333052433305243341491098Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family4e-1168.9
NC_016830:3869572:3944718394471839457341017Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator4e-1168.9
NC_003911:1078949:110804211080421109040999Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family5e-1168.9
NC_004578:5916711:594281359428135943805993Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, AraC family6e-1168.6
NC_011894:7702000:773128277312827731632351Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family9e-1168.2
NC_013222:1659619:168204516820451683022978Robiginitalea biformata HTCC2501, complete genometranscriptional regulator, AraC family protein9e-1168.2
NC_013446:2623528:2624404262440426254981095Comamonas testosteroni CNB-2, complete genometranscriptional regulator, AraC family9e-1168.2
NC_006351:73000:752967529675802507Burkholderia pseudomallei K96243 chromosome 2, complete sequenceAraC family regulatory protein7e-1168.2
NC_009078:74954:773597735977871513Burkholderia pseudomallei 1106a chromosome II, complete sequenceAraC family regulatory protein1e-1067.8
NC_007511:3103999:3107257310725731082731017Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-1067.4
NC_014323:992978:1005383100538310064171035Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein2e-1067
NC_010172:31264:5004950049511311083Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type2e-1067
NC_016593:2015321:2023626202362620248311206Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeTwo component transcriptional regulator, AraC2e-1067
NC_012880:1585255:1593922159392215949351014Dickeya dadantii Ech703, complete genometranscriptional regulator, AraC family2e-1066.6
NC_007492:3180480:318583231858323186830999Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family2e-1066.6
NC_002655:301940:309101309101309844744Escherichia coli O157:H7 EDL933, complete genomeputative AraC-type regulatory protein encoded in prophage CP-933H4e-1065.9
NC_002695:301939:309100309100309843744Escherichia coli O157:H7 str. Sakai, complete genomeputative transcription regulator4e-1065.9
NC_009328:1903291:1909484190948419106861203Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein4e-1065.9
NC_011353:305820:312981312981313724744Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator4e-1065.9
NC_013008:306953:312980312980313723744Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeAraC family transcriptional regulator4e-1065.9
NC_010501:3671517:3693177369317736942051029Pseudomonas putida W619, complete genometranscriptional regulator, AraC family5e-1065.5
NC_016947:2380500:2392470239247023934741005Mycobacterium intracellulare MOTT-02 chromosome, complete genomeAraC family transcriptional regulator8e-1065.1
NC_008146:3401743:3408153340815334091571005Mycobacterium sp. MCS, complete genometranscriptional regulator, AraC family8e-1065.1
NC_009077:3376351:3381947338194733829511005Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-1065.1
NC_008705:3430839:3436435343643534374391005Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-1065.1
NC_003296:673790:7245307245307255491020Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTION REGULATOR PROTEIN9e-1064.7
NC_015690:1967244:2015425201542520164621038Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator8e-1064.7
NC_010172:573046:5788135788135798771065Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type8e-1064.7
NC_014323:1:1504715047161081062Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein1e-0964.3
NC_016887:1714664:172429617242961725198903Nocardia cyriacigeorgica GUH-2, complete genometranscriptional regulator1e-0963.9
NC_010172:31264:3612336123372231101Methylobacterium extorquens PA1, complete genomehelix-turn-helix- domain containing protein AraC type2e-0963.5
NC_010511:2079744:210000321000032100419417Methylobacterium sp. 4-46 chromosome, complete genome2e-0963.5
NC_011757:1288637:1298341129834112994411101Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family2e-0963.5
NC_016641:2773757:2773757277375727753491593Paenibacillus terrae HPL-003 chromosome, complete genomeAraC family transcriptional regulator3e-0963.2
NC_008740:2905990:2905990290599029070031014Marinobacter aquaeolei VT8, complete genomehelix-turn-helix- domain containing protein, AraC type2e-0963.2
NC_000911:15937:206152061521595981Synechocystis sp. PCC 6803, complete genomeregulatory protein; PchR4e-0962.8
NC_017039:15937:206152061521595981Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeregulatory protein PchR4e-0962.8
NC_017052:15937:206152061521595981Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeregulatory protein PchR4e-0962.8
NC_017277:15937:206152061521595981Synechocystis sp. PCC 6803, complete genomeregulatory protein PchR4e-0962.8
NC_016582:11380000:113865851138658511387517933Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAraC family transcription regulator4e-0962.8
NC_014206:1694330:1703164170316417043721209Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator4e-0962.8
NC_014364:3633291:364876036487603649443684Spirochaeta smaragdinae DSM 11293 chromosome, complete genome3e-0962.8
NC_020134:2832857:2831257283125728328791623Clostridium stercorarium subsp. stercorarium DSM 8532, completeTwo component transcriptional regulator, AraC family5e-0962.4
NC_007492:3180480:3186837318683731878891053Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family5e-0962.4
NC_014310:1822751:1837637183763718386561020Ralstonia solanacearum PSI07 megaplasmid, complete sequenceAraC family transcriptional regulator5e-0962.4
NC_010623:1961685:1995143199514319961891047Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family4e-0962.4
NC_008027:2648560:2664870266487026658741005Pseudomonas entomophila L48, complete genomeDNA-binding protein, AraC family4e-0962.4
NC_009338:4869700:4887442488744248884821041Mycobacterium gilvum PYR-GCK chromosome, complete genomehelix-turn-helix domain-containing protein5e-0962
NC_011894:585637:613011613011613421411Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family5e-0962
NC_010162:8873051:888440788844078885000594Sorangium cellulosum 'So ce 56', complete genomeAraC family transcriptional regulator7e-0961.6
NC_003911:4001094:4017291401729140183221032Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family1e-0861.2
NC_008686:1383891:139919713991971400186990Paracoccus denitrificans PD1222 chromosome 1, complete sequencehelix-turn-helix- domain containing protein, AraC type9e-0961.2
NC_020829:4429435:4442768444276844438141047Pseudomonas denitrificans ATCC 13867, complete genomeAraC family transcriptional regulator9e-0961.2
NC_013037:6344532:6368914636891463699511038Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, AraC family9e-0961.2
NC_007974:2097334:2111901211190121129471047Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0860.8
NC_011979:589874:594253594253595227975Geobacter sp. FRC-32, complete genometranscriptional regulator, AraC family2e-0860.5
NC_020064:521500:5491445491445502021059Serratia marcescens FGI94, complete genomeDNA-binding domain-containing protein, AraC-type2e-0860.1
NC_020291:1045058:1049931104993110514631533Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometwo component transcriptional regulator, AraC family2e-0860.1
NC_010511:4415731:442598544259854426191207Methylobacterium sp. 4-46 chromosome, complete genome3e-0859.7
NC_010557:316000:3182723182723192881017Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family3e-0859.7
NC_013406:1640787:1643715164371516449321218Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator3e-0859.7
NC_017075:2689014:2690594269059426916161023Rubrivivax gelatinosus IL144, complete genomeAraC family transcriptional regulator5e-0858.9
NC_010506:5155951:5172420517242051735231104Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, AraC family5e-0858.9
NC_004337:3590323:369849036984903699218729Shigella flexneri 2a str. 301, complete genomeputative ARAC-type regulatory protein6e-0858.5
NC_000913:3624826:366191336619133662641729Escherichia coli K12, complete genomeDNA-binding transcriptional activator6e-0858.5
NC_009800:3685651:370520137052013705929729Escherichia coli HS, complete genometranscriptional regulator GadW6e-0858.5
NC_012759:3529657:355040735504073551135729Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator6e-0858.5
NC_012967:3549880:359338135933813594109729Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional activator6e-0858.5
NC_011748:3983432:402899840289984029726729Escherichia coli 55989, complete genomeDNA-binding transcriptional activator6e-0858.5
AP010958:4313462:433110043311004331828729Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional activator GadW6e-0858.5
CU928160:3709081:372787537278753728603729Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator6e-0858.5
CU928145:3983432:402899840289984029726729Escherichia coli 55989 chromosome, complete genomeDNA-binding transcriptional activator6e-0858.5
NC_011741:3709081:372787537278753728603729Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator6e-0858.5
NC_013353:4313462:433110043311004331828729Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional activator GadW6e-0858.5
NC_013361:4566779:458465945846594585387729Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional activator GadW6e-0858.5
NC_013364:4306000:432337943233794324107729Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional activator GadW6e-0858.5
NC_008061:2193000:2207475220747522085691095Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family8e-0858.2
NC_007511:3371319:3372433337243333734791047Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0757.8
NC_013222:1659619:168700316870031687992990Robiginitalea biformata HTCC2501, complete genometranscriptional regulator, AraC family protein2e-0757.4
NC_009832:1280938:1293321129332112943581038Serratia proteamaculans 568, complete genometranscriptional regulator, AraC family2e-0757.4
NC_015663:3742738:3760268376026837612751008Enterobacter aerogenes KCTC 2190 chromosome, complete genomeAraC family transcriptional regulator2e-0757
NC_020181:1653261:1656963165696316579701008Enterobacter aerogenes EA1509E, complete genomevirulence regulating protein2e-0757
NC_011740:2769961:277659727765972777337741Escherichia fergusonii ATCC 35469, complete genomeputative araC-type regulatory protein from bacteriophage origin2e-0756.6
NC_013192:1504310:1504310150431015053831074Leptotrichia buccalis DSM 1135, complete genometranscriptional regulator, AraC family3e-0756.2
NC_007626:3522265:355454335545433555394852Magnetospirillum magneticum AMB-1, complete genomeAraC-type DNA-binding domain-containing protein4e-0755.8
NC_009786:43331:568185681857615798Escherichia coli E24377A plasmid pETEC_80, complete sequenceAraC-family, transcriptional regulator Rns4e-0755.8
NC_014762:2428721:2451614245161424526541041Sulfuricurvum kujiense DSM 16994 chromosome, complete genometranscriptional regulator, arac family4e-0755.8
NC_016609:3835656:384093838409383841936999Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator4e-0755.8
NC_011884:2422000:2433017243301724340331017Cyanothece sp. PCC 7425, complete genometranscriptional regulator, AraC family6e-0755.5
NC_013592:1602242:1616182161618216171921011Dickeya dadantii Ech586, complete genometranscriptional regulator, AraC family5e-0755.5
NC_015563:4773415:4789612478961247906491038Delftia sp. Cs1-4 chromosome, complete genomeAraC family transcriptional regulator6e-0755.1
NC_009656:5505413:5527239552723955283091071Pseudomonas aeruginosa PA7 chromosome, complete genomeAraC family transcriptional regulator7e-0755.1
NC_004668:241352:263532263532264098567Enterococcus faecalis V583, complete genomeada regulatory protein, putative7e-0755.1
NC_016023:755237:762009762009762713705Bacillus coagulans 36D1 chromosome, complete genometwo component AraC family transcriptional regulator8e-0755.1
NC_007802:1240989:125477712547771255535759Jannaschia sp. CCS1, complete genometranscriptional regulator, AraC family1e-0653.9
NC_008782:1277117:129423112942311295220990Acidovorax sp. JS42, complete genometranscriptional regulator, AraC family1e-0653.9
NC_007643:889755:8903188903188913341017Rhodospirillum rubrum ATCC 11170, complete genomeTranscriptional Regulator, AraC family2e-0653.5
NC_015953:4908069:493169249316924932666975Streptomyces sp. SirexAA-E chromosome, complete genomeAraC family transcriptional regulator2e-0653.5
NC_010511:7553703:757677675767767577060285Methylobacterium sp. 4-46 chromosome, complete genome3e-0653.1
NC_011894:2747491:2753607275360727547491143Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family3e-0653.1
NC_015663:1356982:138623613862361387189954Enterobacter aerogenes KCTC 2190 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_015410:2505168:251160125116012512404804Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_015690:4469775:453452145345214535480960Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator AraC2e-0653.1
NC_016935:4233223:429035742903574291316960Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator2e-0653.1
NC_009256:3056000:306798030679803068948969Burkholderia vietnamiensis G4 chromosome 1, complete sequencetranscriptional regulator3e-0652.8
NC_009926:193821:1953231953231963961074Acaryochloris marina MBIC11017 plasmid pREB1, complete sequencetranscriptional regulator, AraC family4e-0652.4
NC_004129:4596040:459824945982494599214966Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, putative4e-0652.4
NC_011001:163813:1853691853691864151047Burkholderia cenocepacia J2315 chromosome 2, complete sequenceAraC family regulatory protein9e-0651.2