Pre_GI: BLASTP Hits

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Query: NC_009439:101174:108566 Pseudomonas mendocina ymp, complete genome

Start: 108566, End: 111730, Length: 3165

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010717:3868000:3873652387365238765462895Xanthomonas oryzae pv. oryzae PXO99A, complete genomeEF hand domain protein6e-156552
NC_011000:1262324:1273104127310412759862883Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-52208
NC_010501:3575726:3585832358583235886272796Pseudomonas putida W619, complete genomehypothetical protein2e-46188
NC_009256:2509806:2525295252529525279492655Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein2e-46188
NC_010501:3575726:3589399358939935920682670Pseudomonas putida W619, complete genomehypothetical protein8e-44179
NC_013971:3117000:3129058312905831318202763Erwinia amylovora ATCC 49946 chromosome, complete genomechitinase9e-44179
NC_013961:629307:6394816394816422432763Erwinia amylovora, complete genomehypothetical protein9e-44179
NC_008390:2448379:2456231245623124592002970Burkholderia cepacia AMMD chromosome 1, complete sequenceEF hand domain protein2e-40168
NC_012725:97681:1109671109671138102844Burkholderia glumae BGR1 plasmid bglu_4p, complete sequencehypothetical protein2e-35152
NC_015377:34445:5180251802545612760Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequencehypothetical protein5e-35150
NC_012721:770651:8234038234038245571155Burkholderia glumae BGR1 chromosome 2, complete genome1e-28129
NC_015740:110633:1194301194301208211392Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-26122
NC_014118:1171411:1179632117963211821632532Burkholderia sp. CCGE1002 chromosome chromosome 2, completechitinase-like protein1e-23112
NC_004578:5916711:5924253592425359262772025Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein7e-20100
NC_010552:592154:6011786011786038052628Burkholderia ambifaria MC40-6 chromosome 2, complete sequencechitinase-like protein1e-1999.4
NC_016835:1:5143514377942652Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase1e-1793.2
NC_016835:1:1327313273157052433Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase2e-1792
NC_012913:280506:2925072925072949272421Aggregatibacter aphrophilus NJ8700, complete genomeglycoside hydrolase, family 19, putative4e-1790.9
NC_004578:5916711:5923177592317759242561080Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein6e-1687
NC_020829:809457:8171568171568200322877Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein1e-1586.7
NC_007347:1:2040320403227332331Ralstonia eutropha JMP134 chromosome 1, complete sequencehypothetical protein1e-1586.3
NC_017025:1761918:176969117696911770404714Flavobacterium indicum GPTSA100-9, complete genomeGlycoside hydrolase family 19, putative chitinase2e-1585.5
NC_013592:4295449:431316143131614313787627Dickeya dadantii Ech586, complete genomeglycoside hydrolase family 196e-1584
NC_020301:853267:865370865370865978609Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomehypothetical protein7e-1583.6
NC_010067:2529750:2539587253958725418032217Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-1480.5
NC_012912:325913:332536332536333162627Dickeya zeae Ech1591, complete genomeglycoside hydrolase family 191e-1379.7
NC_008570:2014151:2021749202174920243042556Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-1276.6
NC_010161:1501758:151116715111671511748582Bartonella tribocorum CIP 105476, complete genomehypothetical protein9e-1376.6
NC_010161:1324381:133379013337901334371582Bartonella tribocorum CIP 105476, complete genomepeptidoglycan binding protein9e-1376.6
NC_017060:125480:1334831334831369713489Rahnella aquatilis HX2 plasmid PRA1, complete sequencehypothetical protein1e-1276.3
NC_015062:130359:1366531366531401413489Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein1e-1276.3
NC_016835:1:98479847118441998Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein2e-1275.5
NC_010161:2548254:255766425576642558245582Bartonella tribocorum CIP 105476, complete genomehypothetical protein3e-1275.1
NC_010161:1949637:195948819594881960069582Bartonella tribocorum CIP 105476, complete genomehypothetical protein3e-1275.1
NC_013282:2026083:2036072203607220387352664Cronobacter turicensis, complete genomehypothetical protein4e-1274.7
NC_018607:2010500:201515420151542015747594Brachyspira pilosicoli B2904 chromosome, complete genomeglycoside hydrolase2e-1172
NC_015663:4522109:452715045271504527779630Enterobacter aerogenes KCTC 2190 chromosome, complete genomelytic enzyme1e-1069.7
NC_019908:807000:812628812628813203576Brachyspira pilosicoli P43/6/78 chromosome, complete genomeglycoside hydrolase family protein1e-1069.7
NC_010397:1802724:1809368180936818107411374Mycobacterium abscessus chromosome Chromosome, complete sequenceBacteriophage protein3e-1068.6
NC_004578:5916711:593108759310875932019933Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein6e-1067.4
NC_012660:4558122:457641545764154576948534Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage encoded lysozyme9e-1066.6
NC_004129:2234851:224007122400712240622552Pseudomonas fluorescens Pf-5, complete genomepyocin R2_PP, lytic enzyme1e-0966.6
NC_004578:6138669:6149242614924261516202379Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein1e-0966.6
NC_017986:4124335:412990241299024130471570Pseudomonas putida ND6 chromosome, complete genomeglycoside hydrolase family protein1e-0966.6
NC_016612:3314846:333598533359853336533549Klebsiella oxytoca KCTC 1686 chromosome, complete genomelytic enzyme1e-0966.6
NC_004578:5916711:592712959271295928061933Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein1e-0966.2
NC_005773:2177184:218310721831072183652546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase2e-0965.5
NC_012731:2083650:211163421116342112260627Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative glycoside hydrolase3e-0965.1
NC_012214:1974500:198840819884081989031624Erwinia pyrifoliae Ep1/96, complete genomeLytic enzyme3e-0965.1
NC_010625:670482:6788266788266810662241Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencepeptidase M23B4e-0964.7
NC_011094:638552:664550664550665164615Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme4e-0964.7
NC_014121:1682638:169633316963331696881549Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelytic enzyme6e-0963.9
NC_013282:2026083:2031137203113720333382202Cronobacter turicensis, complete genomehypothetical protein6e-0963.9
NC_018604:305957:314155314155314781627Brachyspira pilosicoli WesB complete genomeglycoside hydrolase family 197e-0963.9
NC_017243:58000:613536135361964612Brachyspira intermedia PWS/A chromosome, complete genomeglycoside hydrolase8e-0963.5
NC_015761:1017301:102522610252261025840615Salmonella bongori NCTC 12419, complete genomebacteriophage protein1e-0863.2
NC_015136:1301576:1317230131723013196022373Burkholderia sp. CCGE1001 chromosome 1, complete sequencehypothetical protein1e-0862.8
NC_014150:2560475:256367625636762564269594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 191e-0862.8
NC_014500:4691915:4699276469927647015822307Dickeya dadantii 3937 chromosome, complete genomeEF hand domain-containing protein2e-0862.4
NC_004578:4432983:444604244460424446575534Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative2e-0862.4
NC_014150:1936154:193923519392351939828594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 195e-0860.8
NC_014150:1497381:150134615013461501939594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 195e-0860.8
NC_013282:1804909:182501118250111825565555Cronobacter turicensis, complete genomehypothetical protein7e-0860.5
NC_017047:1906000:191830019183001918926627Rahnella aquatilis HX2 chromosome, complete genomeputative endolysin1e-0759.7
NC_004578:3817330:383103838310383831583546Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative1e-0759.7
NC_015733:1976752:198241519824151982966552Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, lytic enzyme1e-0759.3
NC_011000:2732330:274041227404122740834423Burkholderia cenocepacia J2315 chromosome 1, complete sequence2e-0759.3
NC_005773:2177184:219379921937992194344546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase3e-0758.5
NC_010067:2304313:232964023296402329939300Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0758.2
NC_010067:2529750:2544273254427325473713099Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-0757.8
NC_016002:2037374:205644220564422056984543Pseudogulbenkiania sp. NH8B, complete genomeglycoside hydrolase family protein4e-0654.7
NC_014168:1724993:1731346173134617328481503Segniliparus rotundus DSM 44985 chromosome, complete genomefamily 19 glycoside hydrolase7e-0653.9