Pre_GI: BLASTP Hits

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Query: NC_009438:1282022:1297341 Shewanella putrefaciens CN-32 chromosome, complete genome

Start: 1297341, End: 1298273, Length: 933

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011566:3994239:399664039966403997542903Shewanella piezotolerans WP3, complete genomeAnti-sigmaE factor RseB6e-130463
NC_017046:2756000:277715627771562778112957Salmonella enterica subsp. enterica serovar Typhimurium str. 798sigma-E factor regulatory protein RseB precursor2e-32139
NC_016856:2812905:283162428316242832580957Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Speriplasmic negative regulator of sigmaE2e-32139
NC_012880:3241886:325839332583933259349957Dickeya dadantii Ech703, complete genomesigma E regulatory protein, MucB/RseB2e-28126
NC_021150:1322000:133281013328101333763954Azotobacter vinelandii CA6, complete genomesigma factor algU negative regulatory protein MucB8e-2097.8
NC_012560:1322000:133279813327981333751954Azotobacter vinelandii DJ, complete genomesigma factor algU negative regulatory protein MucB8e-2097.8
NC_012660:1579204:161431416143141615276963Pseudomonas fluorescens SBW25 chromosome, complete genomesigma factor regulatory protein2e-1997.1