Pre_GI: BLASTP Hits

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Query: NC_009434:281474:287347 Pseudomonas stutzeri A1501, complete genome

Start: 287347, End: 288612, Length: 1266

Host Lineage: Pseudomonas stutzeri; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain (A1501; CGMCC 0351) was isolated from rice roots that had been inoculated with strain A15 in a rice paddy in China. It is considered wild-type and has been studied for the nitrogen-fixation process and is used as an inoculant during rice cultivation. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008271:140846:1461601461601473351176Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencetype I restriction-modification system specificity subunit6e-95348
NC_008740:443274:4727574727574740761320Marinobacter aquaeolei VT8, complete genomerestriction modification system DNA specificity domain2e-86320
NC_019907:773944:782100782100782702603Liberibacter crescens BT-1 chromosome, complete genomeType I restriction-modification system, specificity subunit S2e-71270
NC_007519:2847816:2856595285659528579411347Desulfovibrio alaskensis G20 chromosome, complete genometype I restriction-modification system, S subunit6e-56218
NC_008789:1237969:1256434125643412577231290Halorhodospira halophila SL1, complete genomerestriction modification system DNA specificity domain7e-56218
NC_014253:431942:4581784581784595631386Methanohalobium evestigatum Z-7303 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-50200
NC_009656:44500:8547085470868641395Pseudomonas aeruginosa PA7 chromosome, complete genometype I restriction-modification system subunit S2e-50199
NC_013161:4093322:4102957410295741043271371Cyanothece sp. PCC 8802, complete genomerestriction modification system DNA specificity domain protein8e-50198
NC_015572:4618467:4638997463899746404661470Methylomonas methanica MC09 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein9e-50197
NC_015663:2090442:2112256211225621135961341Enterobacter aerogenes KCTC 2190 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-48193
NC_009049:1934398:1962148196214819635181371Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencerestriction modification system DNA specificity domain6e-47188
NC_016816:3974895:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S2e-46186
NC_016816:3952000:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S2e-46186
NS_000195:219785:2500322500322513541323Candidatus Cloacamonas acidaminovoransputative Type I restriction-modification system specificity subunit3e-45182
NC_016830:5994494:6005173600517360065461374Pseudomonas fluorescens F113 chromosome, complete genomeType I restriction-modification system, specificity subunit S2e-44179
NC_009434:695582:742517742517742990474Pseudomonas stutzeri A1501, complete genometype I restriction-modification system, S subunit, truncation5e-44178
NC_008740:257434:2748562748562762411386Marinobacter aquaeolei VT8, complete genomerestriction modification system DNA specificity domain5e-41169
NC_014008:1463795:1483479148347914848221344Coraliomargarita akajimensis DSM 45221 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-40167
NC_014408:1340016:1352967135296713542741308Methanothermobacter marburgensis str. Marburg chromosome, completetype I restriction-modification enzyme, subunit S2e-39164
NC_008751:607209:6192036192036205191317Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomerestriction modification system DNA specificity domain2e-39163
NC_013862:27991:4442444258031362Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequencerestriction modification system DNA specificity domain protein7e-39161
NC_015563:4911188:4921644492164449229751332Delftia sp. Cs1-4 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-39161
NC_008702:1:90359035103841350Azoarcus sp. BH72, complete genomeType I site-specific deoxyribonuclease2e-37156
NC_011901:625712:6338466338466352221377Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype I restriction-modification system, S subunit2e-37156
NC_007484:3035068:3044928304492830463911464Nitrosococcus oceani ATCC 19707, complete genomeRestriction endonuclease S subunits-like5e-37155
NC_006350:1084930:1106431110643111077201290Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative type I restriction enzyme specificity protein6e-37155
NC_010170:4196197:4209964420996442123572394Bordetella petrii, complete genometype I restriction-modification system, S subunit5e-36152
NC_010498:4856011:4859524485952448608101287Escherichia coli SMS-3-5, complete genometype I restriction modification DNA specificity domain-containing protein1e-35150
NC_009077:2308634:2321856232185623232111356Mycobacterium sp. JLS, complete genomerestriction modification system DNA specificity domain1e-35150
NC_016582:4874500:4891407489140748926301224Streptomyces bingchenggensis BCW-1 chromosome, complete genomerestriction modification system DNA specificity subunit6e-34145
NC_005966:3334864:3350154335015433515001347Acinetobacter sp. ADP1, complete genomeputative type I restriction-modification system specificity determinant for hsdM and hsdR (HsdS)1e-33144
NC_010831:788500:7976347976347989441311Chlorobium phaeobacteroides BS1, complete genomeputative type I restriction-modification system2e-33144
NC_006510:2910000:2931510293151029328261317Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system specificity determinant2e-33143
NC_003901:3591500:3598245359824535996271383Methanosarcina mazei Go1, complete genometype I restriction-modification system specificity subunit7e-33142
NC_003919:3396136:3402660340266034039401281Xanthomonas axonopodis pv. citri str. 306, complete genometype I restriction-modification system specificity determinant3e-32140
NC_013861:3341955:3344087334408733454871401Legionella longbeachae NSW150, complete genometype I restriction-modification system (methylase_S)2e-32140
NC_008322:2077628:2102612210261221039581347Shewanella sp. MR-7, complete genomerestriction modification system DNA specificity domain2e-32140
NC_014506:157396:1630731630731644011329Sulfurimonas autotrophica DSM 16294 chromosome, complete genomeRestriction endonuclease S subunit2e-32140
NC_014973:3452100:3487751348775134891301380Geobacter sp. M18 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-32140
NC_008255:3331613:3360658336065833619561299Cytophaga hutchinsonii ATCC 33406, complete genomeprobable type I restriction-modification system4e-32139
NC_013203:202008:2313642313642324761113Atopobium parvulum DSM 20469, complete genome5e-32139
NC_012881:1802000:1822804182280418240061203Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein2e-31137
NC_009943:305854:3181503181503193911242Candidatus Desulfococcus oleovorans Hxd3, complete genomerestriction modification system DNA specificity domain2e-31137
NC_006512:696000:6980826980826994281347Idiomarina loihiensis L2TR, complete genomeRestriction endonuclease S subunit3e-31136
NC_008752:3684739:3713465371346537147541290Acidovorax avenae subsp. citrulli AAC00-1, complete genomerestriction modification system DNA specificity domain7e-31135
NC_012691:2476223:2493223249322324944881266Tolumonas auensis DSM 9187, complete genomerestriction modification system DNA specificity domain protein1e-30134
NC_019896:3311000:3323359332335933246391281Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completerestriction modification system DNA specificity domain-containing protein9e-31134
NC_015576:1442713:145529414552941456130837Mycobacterium sp. JDM601 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-30133
NC_014370:885937:9180299180299193151287Prevotella melaninogenica ATCC 25845 chromosome chromosome I,type I restriction modification DNA specificity domain protein5e-30132
NC_015164:493159:5474975474975487861290Bacteroides salanitronis DSM 18170 chromosome, complete genomerestriction modification system DNA specificity domain1e-29130
NC_014934:244587:2445872445872461101524Cellulophaga algicola DSM 14237 chromosome, complete genomerestriction modification system DNA specificity domain protein9e-29128
NC_014363:1902868:1910148191014819115841437Olsenella uli DSM 7084 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-28127
NC_014210:3671495:3685439368543936866861248Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,restriction modification system DNA specificity domain protein1e-28127
NC_017506:1660072:1665738166573816670211284Marinobacter adhaerens HP15 chromosome, complete genometype I site-specific restriction-modification system, S subunit3e-28126
NC_007404:2743877:2758249275824927594511203Thiobacillus denitrificans ATCC 25259, complete genomeputative restriction endonuclease S subunit2e-28126
NC_018645:13408:2450224502257221221Desulfobacula toluolica Tol2, complete genometype-1 restriction enzyme EcoKI specificity protein5e-28125
NC_009634:299327:3072993072993085221224Methanococcus vannielii SB chromosome, complete genomerestriction modification system DNA specificity subunit8e-28125
NC_002953:15416:3758837588388981311Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative type I restriction enzyme specificity protein1e-27124
NC_020541:1717140:1726398172639817276871290Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit2e-27123
NC_010688:3740399:3747058374705837483741317Xanthomonas campestris pv. campestris, complete genomeType I site-specific deoxyribonuclease (specificity subunit)1e-26120
NC_007086:3805390:3812748381274838140641317Xanthomonas campestris pv. campestris str. 8004, complete genomeputative restriction endonuclease S subunits1e-26120
NC_008787:685401:7055047055047067721269Campylobacter jejuni subsp. jejuni 81-176, complete genometype I restriction modification DNA specificity domain protein5e-26119
NC_013446:1724000:1729654172965417309431290Comamonas testosteroni CNB-2, complete genomehypothetical protein9e-26118
NC_016944:1937645:1958591195859119599191329Vibrio cholerae IEC224 chromosome I, complete sequencetype I restriction enzyme, S subunit8e-26118
NC_009457:1444449:1465386146538614667741389Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein7e-26118
NC_012578:1838470:1859416185941618608041389Vibrio cholerae M66-2 chromosome I, complete sequencehypothetical protein7e-26118
NC_012582:1976962:1996805199680519981931389Vibrio cholerae O395 chromosome chromosome I, complete sequencehypothetical protein7e-26118
NC_002505:1892430:1912283191228319136711389Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein7e-26118
NC_016445:1363831:1383683138368313850231341Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetype I restriction enzyme, S subunit6e-26118
NC_008340:2034810:2045005204500520462641260Alkalilimnicola ehrlichei MLHE-1, complete genomerestriction modification system DNA specificity domain2e-24114
NC_015422:2126614:2142598214259821440221425Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein2e-24114
NC_014972:247028:2484182484182494911074Desulfobulbus propionicus DSM 2032 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-24114
NC_017195:709098:7177537177537190571305Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetype I restriction-modification system specificity determinant3e-24113
NC_012669:1700626:1710630171063017119131284Beutenbergia cavernae DSM 12333, complete genomerestriction modification system DNA specificity domain protein2e-22107
NC_009665:2602000:2614480261448026157631284Shewanella baltica OS185 chromosome, complete genomerestriction modification system DNA specificity subunit2e-22106
NC_020829:1:1056710567119461380Pseudomonas denitrificans ATCC 13867, complete genomeputative type I restriction enzyme, S subunit5e-22105
NC_011666:1661491:1673298167329816746171320Methylocella silvestris BL2, complete genometype I restriction enzyme2e-21103
NC_014479:700281:7099167099167112171302Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeType I restriction modification system DNA specificity domain protein (HsdS)3e-21103
NC_013093:1036772:1069664106966410709921329Actinosynnema mirum DSM 43827, complete genomerestriction modification system DNA specificity domain protein5e-21102
NC_008942:815280:8215758215758229151341Methanocorpusculum labreanum Z, complete genomehypothetical protein5e-21102
NC_002516:3079850:3094757309475730960521296Pseudomonas aeruginosa PAO1, complete genomehypothetical protein5e-21102
NC_014366:1435785:1438219143821914393101092Gamma proteobacterium HdN1, complete genome9e-21101
NC_009943:272158:2834502834502846311182Candidatus Desulfococcus oleovorans Hxd3, complete genomerestriction modification system DNA specificity domain2e-20100
NC_020156:861402:8652618652618665051245Nonlabens dokdonensis DSW-6, complete genometype I restriction-modification system S(specificity) subunit3e-2099.8
NC_010003:1126800:1142463114246311437521290Petrotoga mobilis SJ95, complete genomerestriction modification system DNA specificity domain4e-2099.8
NC_015703:4483500:4499204449920445014052202Runella slithyformis DSM 19594 chromosome, complete genometype I restriction-modification system, M subunit4e-2099.4
NC_015434:4640769:4650705465070546519911287Verrucosispora maris AB-18-032 chromosome, complete genomerestriction modification system DNA specificity subunit5e-2099.4
NC_019904:5308998:531281753128175313734918Echinicola vietnamensis DSM 17526 chromosome, complete genomerestriction endonuclease S subunit5e-2099
NC_013235:5127148:5143727514372751449621236Nakamurella multipartita DSM 44233, complete genomeRestriction endonuclease S subunits-like protein7e-2098.6
NC_007498:3399478:3416488341648834176721185Pelobacter carbinolicus DSM 2380, complete genomerestriction endonuclease S subunit6e-1995.5
NC_014632:1112733:1145320114532011466211302Ilyobacter polytropus DSM 2926 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1995.1
NC_015953:4746983:4757318475731847586491332Streptomyces sp. SirexAA-E chromosome, complete genomeRestriction endonuclease S subunits-like protein2e-1893.6
NC_010995:4338860:4352957435295743541531197Cellvibrio japonicus Ueda107, complete genometype I restriction system specificity protein8e-1892
NC_015656:4850833:486428048642804864915636Frankia symbiont of Datisca glomerata chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-1791.7
NC_019964:2816990:2836848283684828381791332Halovivax ruber XH-70, complete genomerestriction endonuclease S subunit9e-1788.2
NC_005773:106000:1218821218821232281347Pseudomonas syringae pv. phaseolicola 1448A, complete genometype I restriction-modification system specificity subunit1e-1688.2
NC_007508:1324000:1333012133301213343311320Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype I site-specific deoxyribonuclease (specificity subunit)2e-1687.4
NC_014315:1396990:1412173141217314136661494Nitrosococcus watsoni C-113 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-1685.1
NC_012108:2194251:2194251219425121955311281Desulfobacterium autotrophicum HRM2, complete genomeHsdS21e-1584.7
NC_011832:1122268:113248811324881133105618Candidatus Methanosphaerula palustris E1-9c, complete genomerestriction modification system DNA specificity domain protein2e-1584
NC_018876:1061682:1092892109289210942621371Methanolobus psychrophilus R15 chromosome, complete genomehsdS3e-1583.2
NC_013440:3813132:3832106383210638333771272Haliangium ochraceum DSM 14365, complete genomerestriction modification system DNA specificity domain protein5e-1582.8
NC_015865:229883:2407132407132420051293Thermococcus sp. 4557 chromosome, complete genomerestriction modification system DNA specificity subunit9e-1581.6
NC_014169:1784435:1795590179559017967861197Bifidobacterium longum subsp. longum JDM301 chromosome, completerestriction endonuclease S subunit2e-1480.5
NC_009142:949510:9749529749529761871236Saccharopolyspora erythraea NRRL 2338, complete genomeputative restriction modification system DNA specificity domain8e-1478.6
NC_018721:3155579:3166677316667731679571281Psychroflexus torquis ATCC 700755 chromosome, complete genometype I restriction-modification system, specificity subunit S HsdS3e-1377
NC_013515:715009:7417177417177431381422Streptobacillus moniliformis DSM 12112, complete genomerestriction modification system DNA specificity domain protein6e-1375.9
NC_013169:1410384:1418952141895214200161065Kytococcus sedentarius DSM 20547, complete genomehypothetical protein6e-1375.9
NC_014562:3985500:3997879399787939990151137Pantoea vagans C9-1 chromosome, complete genometype I restriction-modification system specificty subunit2e-1170.9
NC_011071:1178423:1189714118971411908081095Stenotrophomonas maltophilia R551-3, complete genomerestriction modification system DNA specificity domain2e-1170.5
NC_015416:621513:6339436339436351991257Methanosaeta concilii GP-6 chromosome, complete genometype I restriction-modification enzyme, S subunit3e-1169.7
NC_016002:1048420:1074827107482710761731347Pseudogulbenkiania sp. NH8B, complete genometype I restriction-modification system specificity subunit4e-1169.7
NC_017278:258921:279639279639280349711Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein4e-1169.7
NC_004578:1190000:1193259119325911945271269Pseudomonas syringae pv. tomato str. DC3000, complete genometype I restriction-modification system, S subunit2e-1067.8
NC_015562:755785:7636407636407649591320Methanotorris igneus Kol 5 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1067.8
NC_009801:2898426:2914257291425729153781122Escherichia coli E24377A, complete genomeputative type I restriction-modification system, S subunit2e-1067.8
NC_016631:3917253:3956143395614339576421500Granulicella mallensis MP5ACTX8 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-1067
NC_008312:3728329:3735023373502337362311209Trichodesmium erythraeum IMS101, complete genomerestriction modification system DNA specificity domain5e-1066.2
NC_013730:3729626:3747015374701537485771563Spirosoma linguale DSM 74, complete genomerestriction modification system DNA specificity domain protein1e-0965.1
NC_013959:1059004:1067359106735910698062448Sideroxydans lithotrophicus ES-1 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-0964.3
NC_009439:608500:6145236145236157701248Pseudomonas mendocina ymp, complete genomerestriction modification system DNA specificity subunit2e-0964.3
NC_016047:2480921:2491021249102124922981278Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetype I restriction-modification enzyme, S subunit2e-0963.5
NC_012881:3004784:3009162300916230104091248Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein6e-0962.4
NC_011206:2369500:2383643238364323848991257Acidithiobacillus ferrooxidans ATCC 53993, complete genomerestriction modification system DNA specificity domain1e-0861.2
NC_016943:2054688:2067149206714920683541206Blastococcus saxobsidens DD2, complete genomeputative Restriction modification system DNA specificity domain2e-0860.8
NC_015222:3137167:3144490314449031457521263Nitrosomonas sp. AL212 chromosome, complete genomerestriction modification system DNA specificity domain3e-0860.1
NC_007645:5160133:5182397518239751836171221Hahella chejuensis KCTC 2396, complete genomeRestriction endonuclease S subunit4e-0859.7
NC_007759:2097734:2114849211484921160631215Syntrophus aciditrophicus SB, complete genometype I restriction-modification system specificity subunit4e-0859.7
NC_016629:3789554:3799536379953638008641329Desulfovibrio africanus str. Walvis Bay chromosome, completerestriction modification system DNA specificity domain-containing protein5e-0859.3
NC_015660:1918307:1937843193784319390361194Geobacillus thermoglucosidasius C56-YS93 chromosome, completerestriction modification system DNA specificity domain-containing protein7e-0858.9
NC_009052:5089963:5088875508887550899661092Shewanella baltica OS155, complete genomerestriction modification system DNA specificity domain7e-0858.9
NC_008541:1042322:1066991106699110681631173Arthrobacter sp. FB24 chromosome 1, complete sequencerestriction modification system DNA specificity domain7e-0858.9
NC_016620:781995:7957407957407969781239Bacteriovorax marinus SJ, complete genomeputative type I restriction enzyme specificity protein2e-0757.4
NC_009434:695582:729117729117729764648Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0757.4
NC_016816:1137904:1156994115699411586911698Pantoea ananatis LMG 5342, complete genometype I restriction modification DNA specificity domain protein2e-0757.4
NC_008278:5855401:5878614587861458811512538Frankia alni ACN14a, complete genomeHypothetical protein; putative Type I restriction-modification system, M subunit2e-0757.4
NC_008344:554229:5639575639575652251269Nitrosomonas eutropha C91, complete genomerestriction modification system DNA specificity domain4e-0756.2
NC_012669:4323490:4333406433340643346231218Beutenbergia cavernae DSM 12333, complete genomeRestriction endonuclease S subunit5e-0756.2
NC_013799:1:1649316493177731281Hydrogenobacter thermophilus TK-6, complete genomerestriction endonuclease S subunit8e-0755.5
NC_017161:1:1655416554178341281Hydrogenobacter thermophilus TK-6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-0755.5
NC_009943:1499111:1505694150569415097824089Candidatus Desulfococcus oleovorans Hxd3, complete genomeN-6 DNA methylase2e-0653.9
NC_004757:427483:4375654375654389051341Nitrosomonas europaea ATCC 19718, complete genomeRestriction modification system, type I3e-0653.5
NC_014828:501342:510451510451511032582Ethanoligenens harbinense YUAN-3 chromosome, complete genomerestriction modification system, type I3e-0653.1
NC_015161:1556766:1580026158002615813671342Deinococcus proteolyticus MRP chromosome, complete genome4e-0653.1