Pre_GI: BLASTP Hits

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Query: NC_009092:3057319:3073024 Shewanella loihica PV-4, complete genome

Start: 3073024, End: 3074268, Length: 1245

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017059:469108:4877864877864890211236Rhodospirillum photometricum DSM 122, complete genomePutative branched-chain amino acid transport system substrate-binding protein1e-157556
NC_005296:4574213:4576388457638845776681281Rhodopseudomonas palustris CGA009, complete genomepossible branched-chain amino acid ABC transport system substrate-binding protein2e-119429
NC_015387:1278471:1298209129820912993721164Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeamino acid/amide ABC transporter substrate-binding protein, haat family5e-1685.9
NC_014931:6203872:6206106620610662074371332Variovorax paradoxus EPS chromosome, complete genomehypothetical protein9e-1581.6
NC_009483:2489000:2489003248900324901421140Geobacter uraniireducens Rf4 chromosome, complete genomeextracellular ligand-binding receptor3e-0860.1
NC_007503:2010858:2024141202414120253251185Carboxydothermus hydrogenoformans Z-2901, complete genomehigh affinity branched-chain amino acid ABC transporter, amino acid-binding protein8e-0858.5
NC_009718:579291:5862885862885874481161Fervidobacterium nodosum Rt17-B1, complete genomeextracellular ligand-binding receptor4e-0756.2
NC_011386:1727203:1730320173032017315011182Oligotropha carboxidovorans OM5, complete genomeextracellular ligand-binding receptor6e-0755.8
NC_014831:786011:7933307933307945381209Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter substrate-binding protein, HAAT family7e-0755.5
NC_008786:3045770:3066036306603630673611326Verminephrobacter eiseniae EF01-2, complete genomeputative branched-chain amino acid transport system substrate-binding protein8e-0755.5
NC_011661:961129:9625519625519636811131Dictyoglomus turgidum DSM 6724, complete genomeExtracellular ligand-binding receptor8e-0755.5
NC_011297:787932:7916897916897928191131Dictyoglomus thermophilum H-6-12, complete genomebranched chain amino acid ABC transporter2e-0654.3
NC_014828:2497462:2514413251441325156571245Ethanoligenens harbinense YUAN-3 chromosome, complete genomeABC transporter, periplasmic solute-binding protein, putative9e-0652