Pre_GI: BLASTP Hits

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Query: NC_009092:1599526:1608453 Shewanella loihica PV-4, complete genome

Start: 1608453, End: 1608980, Length: 528

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011566:1597751:159965015996501600174525Shewanella piezotolerans WP3, complete genomeTranscriptional activator RfaH1e-56218
NC_007954:3171081:320585032058503206350501Shewanella denitrificans OS217, complete genometranscriptional activator RfaH1e-51202
NC_011663:1709003:171310317131031713609507Shewanella baltica OS223 chromosome, complete genometranscriptional acivator RfaH2e-51201
NC_009665:3460906:348608834860883486594507Shewanella baltica OS185 chromosome, complete genometranscriptional acivator RfaH2e-51201
NC_009052:3381943:340800234080023408508507Shewanella baltica OS155, complete genomeNusG antitermination factor3e-51201
NC_008577:1579950:158776915877691588269501Shewanella sp. ANA-3 chromosome 1, complete sequenceNusG antitermination factor7e-50196
NC_008322:1595500:159756415975641598064501Shewanella sp. MR-7, complete genomeNusG antitermination factor2e-48191
NC_008700:2701500:273069327306932731196504Shewanella amazonensis SB2B, complete genometranscriptional activator rfaH, putative3e-44177
NC_014541:1165991:117021011702101170701492Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional acivator RfaH3e-25114
NC_012559:2663747:270735427073542707872519Laribacter hongkongensis HLHK9, complete genomeRfaH3e-1994.7
NC_004129:5846415:585309858530985853817720Pseudomonas fluorescens Pf-5, complete genometranscriptional activator RfaH6e-1890.1
NC_014532:1481787:148850814885081489050543Halomonas elongata DSM 2581, complete genomeK05785 transcriptional antiterminator RfaH6e-1683.6
NC_021150:1564229:156707215670721567533462Azotobacter vinelandii CA6, complete genometranscriptional activator RfaH7e-1580.1
NC_012560:1564500:156705915670591567520462Azotobacter vinelandii DJ, complete genometranscriptional activator RfaH7e-1580.1
NC_014305:126029:140112140112140666555Erwinia billingiae Eb661 plasmid pEB170, complete sequenceTranscriptional activator3e-1374.7
NC_017506:2504746:253812125381212538501381Marinobacter adhaerens HP15 chromosome, complete genometranscriptional activator RfaH5e-1373.9
NC_018691:1822731:182592618259261826393468Alcanivorax dieselolei B5 chromosome, complete genometranscriptional activator RfaH8e-1373.2
NC_008781:3365468:339717433971743397728555Polaromonas naphthalenivorans CJ2, complete genomeNusG antitermination factor3e-1271.2
NC_010424:1778459:179698617969861797507522Candidatus Desulforudis audaxviator MP104C, complete genomeNusG antitermination factor8e-1166.6
NC_019902:27574:458834588346371489Thioalkalivibrio nitratireducens DSM 14787, complete genomeTranscriptional activator RfaH3e-1064.7
NC_016026:997225:100262410026241003127504Micavibrio aeruginosavorus ARL-13 chromosome, complete genometranscription termination factor nusG family protein3e-1064.7
NC_005773:1135374:116149511614951162073579Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional activator RfaH2e-0961.6
NC_012225:2611680:262235726223572622944588Brachyspira hyodysenteriae WA1, complete genometranscription antitermination protein NusG1e-0756.2
NC_017243:2672909:268887226888722689459588Brachyspira intermedia PWS/A chromosome, complete genometranscription antitermination protein NusG4e-0754.3
NC_014330:1685698:169023116902311690812582Brachyspira pilosicoli 95/1000 chromosome, complete genometranscription antitermination protein NusG9e-0753.1
NC_018604:393338:397142397142397723582Brachyspira pilosicoli WesB complete genometranscription antitermination protein NusG9e-0753.1
NC_018607:2472250:248782224878222488403582Brachyspira pilosicoli B2904 chromosome, complete genometranscription antitermination protein NusG9e-0753.1
NC_014759:2598515:261424026142402614764525Marivirga tractuosa DSM 4126 chromosome, complete genomenusg antitermination factor1e-0652.8
NC_008639:2968000:297221029722102972752543Chlorobium phaeobacteroides DSM 266, complete genomeNusG antitermination factor2e-0652
NC_014041:558000:563449563449563943495Zunongwangia profunda SM-A87 chromosome, complete genomeNusG antitermination factor3e-0651.6
NC_015714:238891:241078241078241635558Treponema paraluiscuniculi Cuniculi A chromosome, complete genometranscription antitermination protein NusG5e-0650.4
NC_009662:222964:250162250162250692531Nitratiruptor sp. SB155-2, complete genometranscription antitermination protein NusG5e-0650.4
NC_005823:905500:909280909280909825546Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130transcription antitermination protein6e-0650.4
NC_004342:3370310:338714233871423387687546Leptospira interrogans serovar Lai str. 56601 chromosome I,hypothetical protein6e-0650.4
NC_014150:2201251:222594722259472226534588Brachyspira murdochii DSM 12563 chromosome, complete genomeNusG antitermination factor8e-0650.1