Pre_GI: BLASTP Hits

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Query: NC_009089:873295:873295 Clostridium difficile 630, complete genome

Start: 873295, End: 874437, Length: 1143

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:805867:8089098089098100511143Clostridium difficile BI1, complete genomehypothetical protein0683
NC_013315:796313:7993557993558004971143Clostridium difficile CD196 chromosome, complete genomehypothetical protein0683
NC_013316:796895:7968957968957980371143Clostridium difficile R20291, complete genomehypothetical protein0683
NC_018664:985689:9904429904429915721131Clostridium acidurici 9a chromosome, complete genomeTPR repeat-containing protein2e-51203
NC_009922:1917271:1931206193120619323451140Alkaliphilus oremlandii OhILAs, complete genomeTetratricopeptide TPR_2 repeat protein2e-50199
NC_014614:1309203:1310989131098913121041116Clostridium sticklandii, complete genomehypothetical protein3e-26119
NC_010516:3368951:3368951336895133700271077Clostridium botulinum B1 str. Okra, complete genomeTPR domain protein6e-1685.5
NC_009617:1165539:1179374117937411804741101Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein3e-0860.1
NC_008593:980731:9826869826869837651080Clostridium novyi NT, complete genomeTPR repeats containing protein5e-0858.9
NC_008262:2025699:2030616203061620317131098Clostridium perfringens SM101, complete genomeTPR domain protein1e-0757.8