Pre_GI: BLASTP Hits

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Query: NC_009089:370555:392127 Clostridium difficile 630, complete genome

Start: 392127, End: 392411, Length: 285

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:371953:393532393532393816285Clostridium difficile R20291, complete genomecobalt transport protein2e-34144
NC_016627:4203775:422668742266874227013327Clostridium clariflavum DSM 19732 chromosome, complete genomecobalt transport protein7e-1992.4
NC_011094:2061000:208221620822162082497282Salmonella enterica subsp. enterica serovar Schwarzengrund strcobalt transport protein CbiN1e-1892
NC_011149:2040396:206052820605282060809282Salmonella enterica subsp. enterica serovar Agona str. SL483,cobalt transport protein CbiN1e-1892
NC_015573:2900906:290263629026362902932297Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeCobalt transport protein cbiN1e-1891.7
NC_011898:1558208:157230315723031572596294Clostridium cellulolyticum H10, complete genomecobalt transport protein3e-1890.5
NC_013892:853366:857779857779858060282Xenorhabdus bovienii SS-2004 chromosome, complete genomecobalt transporter cbiN6e-1889.4
NC_013517:1055854:109106810910681091355288Sebaldella termitidis ATCC 33386, complete genomeCobalt transport protein CbiN1e-1685.1
NC_016791:1132451:113554211355421135835294Clostridium sp. BNL1100 chromosome, complete genomecobalt ABC transporter substrate-binding protein1e-1685.1
NC_007298:1824335:182398818239881824338351Dechloromonas aromatica RCB, complete genomecobalt transport protein CbiN4e-1373.6
NC_007955:1779222:178326717832671783566300Methanococcoides burtonii DSM 6242, complete genomecobalt transport binding protein5e-1373.2
NC_013192:63111:906679066790969303Leptotrichia buccalis DSM 1135, complete genomeCobalt transport protein CbiN5e-1373.2
NC_014734:3086165:309094430909443091231288Paludibacter propionicigenes WB4 chromosome, complete genomecobalt transport protein cbin5e-0959.7