Pre_GI: BLASTP Hits

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Query: NC_009089:3142976:3148377 Clostridium difficile 630, complete genome

Start: 3148377, End: 3149054, Length: 678

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:3056925:306232530623253063002678Clostridium difficile R20291, complete genomeputative sortase B7e-98356
NC_008261:576923:588204588204588953750Clostridium perfringens ATCC 13124, complete genomesortase B7e-32137
NC_003212:2293425:231489023148902315630741Listeria innocua Clip11262, complete genomehypothetical protein2e-28125
NC_013893:54688:747527475275474723Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeNPQTN specific sortase B2e-2099
NC_017353:88918:108982108982109704723Staphylococcus lugdunensis N920143, complete genomesortase2e-2099
NC_015389:2030154:206955220695522070505954Coriobacterium glomerans PW2 chromosome, complete genomepeptidase C60 sortase A and B2e-1479
NC_014622:5662000:566766756676675668446780Paenibacillus polymyxa SC2 chromosome, complete genomepeptidase c60 sortase a and b7e-1373.9
NC_008023:1070986:107526910752691076054786Streptococcus pyogenes MGAS2096, complete genomeSortase B family protein9e-1373.6
NC_014393:3979350:398699739869973987782786Clostridium cellulovorans 743B chromosome, complete genomepeptidase C60 sortase A and B8e-1270.5