Pre_GI: BLASTP Hits

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Query: NC_009089:2150062:2167698 Clostridium difficile 630, complete genome

Start: 2167698, End: 2168765, Length: 1068

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:2033906:2110006211000621110731068Clostridium difficile R20291, complete genomeputative conjugative transposon hypothetical protein0698
NC_012778:1819559:1847185184718518482911107Eubacterium eligens ATCC 27750, complete genomeDNA helicase II / ATP-dependent DNA helicase PcrA1e-74280
NC_014664:1614568:1632598163259816337371140Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomehypothetical protein5e-64244
NC_010943:2465976:2481284248128424823811098Stenotrophomonas maltophilia K279a, complete genomeputative conjugative transposon conserved hypothetical protein5e-52204
NC_007494:867901:8816778816778827621086Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencehypothetical protein7e-50197
NC_008697:55406:6281362813638501038Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceputative DNA helicase II / ATP-dependent DNA helicase PcrA3e-42172
NC_010612:4400260:4416097441609744171311035Mycobacterium marinum M, complete genomehelicase1e-40167
NC_018080:3055358:305995030599503060927978Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-36153
NC_020829:940692:9593299593299605071179Pseudomonas denitrificans ATCC 13867, complete genomeDNA/RNA helicase6e-32138
NC_007164:1434305:1466341146634114674381098Corynebacterium jeikeium K411, complete genomehypothetical protein6e-26118
NC_014931:724102:7378077378077388681062Variovorax paradoxus EPS chromosome, complete genomehypothetical protein1e-23110
NC_016860:3995445:4012197401219740132191023Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-23109
NC_016826:929259:9400269400269410271002Streptococcus infantarius subsp. infantarius CJ18 chromosome,hypothetical protein1e-20100
NC_007508:237771:2640182640182650491032Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein2e-20100
NC_010524:2117347:2123271212327121243021032Leptothrix cholodnii SP-6, complete genomehypothetical protein3e-2099.8
NC_010645:369408:3812823812823823131032Bordetella avium 197N, complete genomehypothetical protein3e-2099.8
NC_013132:3704288:3727123372712337281511029Chitinophaga pinensis DSM 2588, complete genomehypothetical protein1e-1894.4
NC_015977:935798:9492879492879506271341Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-0757.4