Pre_GI: BLASTP Hits

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Query: NC_008380:4078670:4097494 Rhizobium leguminosarum bv. viciae 3841, complete genome

Start: 4097494, End: 4098096, Length: 603

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012850:3454270:347256334725633473165603Rhizobium leguminosarum bv. trifolii WSM1325, complete genometranscriptional regulator, TetR family4e-102370
NC_010994:3666651:368539136853913685993603Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, TetR family1e-90332
NC_007761:3564449:358390635839063584508603Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, TetR family5e-88323
NC_003304:2507000:252007525200752520734660Agrobacterium tumefaciens str. C58 chromosome circular, completetranscriptional regulator, TetR family5e-44177
NC_003062:2506959:251996225199622520621660Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein5e-44177
NC_015183:2483653:250008725000872500746660Agrobacterium sp. H13-3 chromosome, complete genometranscriptional regulator, TetR family3e-36151
NC_011988:1036618:104120510412051041873669Agrobacterium vitis S4 chromosome 2, complete genometranscriptional regulator TetR family1e-35149
NC_015957:3067919:308703330870333087626594Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR9e-1063.5
NC_008463:4133700:414613741461374146754618Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator3e-0858.2
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein1e-0756.2
NC_015160:1055220:105522010552201055807588Odoribacter splanchnicus DSM 20712 chromosome, complete genometranscriptional regulator, TetR family4e-0754.7
NC_003295:3421520:346908034690803469694615Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-0653.1
NC_010628:1734000:174749817474981748085588Nostoc punctiforme PCC 73102, complete genometranscriptional regulator, TetR family2e-0652.4
NC_013406:5066769:508499650849965085649654Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_014500:842493:846764846764847381618Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator5e-0650.8