Pre_GI: BLASTP Hits

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Query: NC_008268:3418000:3429380 Rhodococcus sp. RHA1, complete genome

Start: 3429380, End: 3430630, Length: 1251

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008268:3162824:3181094318109431822901197Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator3e-22106
NC_016906:3286384:3287341328734132885641224Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative TetR family transcriptional regulator4e-1996.3
NC_014168:2575799:2599232259923226004761245Segniliparus rotundus DSM 44985 chromosome, complete genomeTetR family transcriptional regulator2e-1480.9
NC_017186:8683964:8687504868750486886821179Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator7e-1375.5
NC_014318:8687448:8687448868744886886261179Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator7e-1375.5
NC_009338:4869700:489432848943284894990663Mycobacterium gilvum PYR-GCK chromosome, complete genomeTetR family transcriptional regulator3e-0860.1
NC_008278:2732890:274044927404492741114666Frankia alni ACN14a, complete genomehypothetical protein1e-0655.1
NC_016947:2380500:240160224016022402195594Mycobacterium intracellulare MOTT-02 chromosome, complete genomeTetR family transcriptional regulator1e-0654.3
NC_014758:310394:344457344457345041585Calditerrivibrio nitroreducens DSM 19672 chromosome, completetranscriptional regulator, tetr family5e-0652.8