Pre_GI: BLASTP Hits

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Query: NC_008268:3162824:3181094 Rhodococcus sp. RHA1, complete genome

Start: 3181094, End: 3182290, Length: 1197

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017186:8683964:8687504868750486886821179Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator1e-32140
NC_014318:8687448:8687448868744886886261179Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator1e-32140
NC_016906:3286384:3287341328734132885641224Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative TetR family transcriptional regulator7e-32138
NC_008268:3418000:3429380342938034306301251Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator1e-1997.4
NC_014168:2575799:2599232259923226004761245Segniliparus rotundus DSM 44985 chromosome, complete genomeTetR family transcriptional regulator5e-1582.4
NC_009338:4869700:489432848943284894990663Mycobacterium gilvum PYR-GCK chromosome, complete genomeTetR family transcriptional regulator4e-0962.8
NC_015738:220000:226778226778227443666Eggerthella sp. YY7918, complete genometranscriptional regulator6e-0652.4