Pre_GI: BLASTP Hits

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Query: NC_008261:551513:556017 Clostridium perfringens ATCC 13124, complete genome

Start: 556017, End: 557166, Length: 1150

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014171:5068500:5082146508214650833031158Bacillus thuringiensis BMB171 chromosome, complete genomeglycosyltransferase2e-28127
NC_010999:2155714:2170331217033121715121182Lactobacillus casei, complete genomePutative rhamnosyltransferase7e-23108
NC_014334:1954333:1970730197073019718961167Lactobacillus casei str. Zhang chromosome, complete genomeputative rhamnosyl transferase WchF3e-21102
NC_012926:727716:7369027369027380501149Streptococcus suis BM407 chromosome, complete genomerhamnosyltransferase2e-1790.5
NC_012925:1125876:1141091114109111422391149Streptococcus suis P1/7, complete genomerhamnosyltransferase2e-1790.5
NC_014727:1877764:1899962189996219011821221Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,glycosyl transferase, group 1 family protein, putative8e-1581.6
NC_013714:2086526:2127883212788321289831101Bifidobacterium dentium Bd1, complete genomeRhamnosyltransferase9e-1168.2
NC_009442:1216355:123071712307171230932216Streptococcus suis 05ZYH33 chromosome, complete genomeglycosyltransferase2e-1067.4
NC_008255:3285561:3303881330388133050801200Cytophaga hutchinsonii ATCC 33406, complete genomea-glycosyltransferase-related protein, glycosyltransferase family 4 protein5e-0652.4