Pre_GI: BLASTP Hits

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Query: NC_008261:2524913:2527004 Clostridium perfringens ATCC 13124, complete genome

Start: 2527004, End: 2528140, Length: 1137

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020291:1014333:1029549102954910306641116Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesporulation protein YqfD3e-82305
NC_008593:1704207:1706288170628817074961209Clostridium novyi NT, complete genomestage IV sporulation protein, putative6e-61234
NC_009698:3006500:3011464301146430126241161Clostridium botulinum A str. Hall chromosome, complete genomestage IV sporulation protein1e-58227
NC_009697:3071198:3074542307454230757021161Clostridium botulinum A str. ATCC 19397 chromosome, completestage IV sporulation protein1e-58227
NC_009495:3138355:3141699314169931428591161Clostridium botulinum A str. ATCC 3502 chromosome, complete genomestage IV sporulation protein1e-58227
NC_010516:3196158:3199504319950432006641161Clostridium botulinum B1 str. Okra, complete genomeputative stage IV sporulation protein3e-58226
NC_009699:3178222:3182050318205031832101161Clostridium botulinum F str. Langeland chromosome, complete genomestage IV sporulation protein3e-58226
NC_017297:3178378:3182206318220631833661161Clostridium botulinum F str. 230613 chromosome, complete genomeputative stage IV sporulation protein3e-58226
NC_010520:3204480:3207826320782632089861161Clostridium botulinum A3 str. Loch Maree, complete genomeputative stage IV sporulation protein3e-58226
NC_012563:3374904:3378250337825033794101161Clostridium botulinum A2 str. Kyoto, complete genomesporulation protein YqfD3e-58225
NC_012658:3213498:3216844321684432180041161Clostridium botulinum Ba4 str. 657 chromosome, complete genomesporulation protein YqfD2e-57223
NC_021182:2192718:2213216221321622143581143Clostridium pasteurianum BC1, complete genomesporulation protein YqfD9e-55214
NC_009633:3055413:3066367306636730675991233Alkaliphilus metalliredigens QYMF chromosome, complete genomeputative stage IV sporulation YqfD3e-1273.2
NC_002570:1426000:1445063144506314462561194Bacillus halodurans C-125, complete genomestage IV sporulation protein3e-1066.6
NC_011898:649000:6647786647786659741197Clostridium cellulolyticum H10, complete genomesporulation protein YqfD3e-1066.6
NC_009674:3073564:3079089307908930802881200Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeputative stage IV sporulation YqfD6e-0858.9
NC_010184:4155345:4158650415865041598491200Bacillus weihenstephanensis KBAB4, complete genomeputative stage IV sporulation YqfD7e-0652