Pre_GI: BLASTP Hits

Some Help

Query: NC_008148:583030:608239 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 608239, End: 608946, Length: 708

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009328:293000:312108312108312737630Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease2e-24112
NC_016593:353505:379641379641380270630Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completebinding-protein-dependent transport system inner membrane component5e-24111
NC_006510:310212:341910341910342539630Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-24111
NC_013411:1168049:118585111858511186480630Geobacillus sp. Y412MC61, complete genomebinding-protein-dependent transport systems inner membrane component2e-23109
NC_014915:308056:325858325858326487630Geobacillus sp. Y412MC52 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-23109
NC_014206:345499:376734376734377363630Geobacillus sp. C56-T3 chromosome, complete genomebinding-protein-dependent transporters inner membrane component4e-23108
NC_014377:210888:220474220474221115642Thermosediminibacter oceani DSM 16646 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-21102
NC_009792:2688747:271069327106932711316624Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-20100
NC_014209:1580423:159879915987991599437639Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,binding-protein-dependent transport systems inner membrane component6e-1994.4
NC_015425:2528549:2560000256000025615861587Clostridium botulinum BKT015925 chromosome, complete genomeputative glycine betaine/carnitine/choline ABC transporter9e-1994
NC_010718:128423:141500141500142150651Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component1e-1893.2
NC_009727:1899876:1899876189987619014561581Coxiella burnetii Dugway 7E9-12, complete genomeABC transporter, quaternary amine uptake transporter (QAT) family, permease/periplasmic amine-binding protein3e-1892
NC_014614:6115:392333923339889657Clostridium sticklandii, complete genomeGlycine betaine transport system permease protein / Glycine betaine-binding protein (fragment)4e-1891.7
NC_004461:205068:213697213697214332636Staphylococcus epidermidis ATCC 12228, complete genomeopuCB protein4e-1891.7
NC_015589:3241364:324228832422883242905618Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-1890.9
NC_016023:1143130:1143130114313011446591530Bacillus coagulans 36D1 chromosome, complete genomeglycine betaine ABC transporter periplasmic protein7e-1890.9
NC_018515:4196409:422204142220414222697657Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease9e-1890.5
NC_014121:2247913:226518222651822265829648Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative osmoprotectant transport system permease protein3e-1789
NC_004461:205068:215313215313215960648Staphylococcus epidermidis ATCC 12228, complete genomeopuCD protein7e-1787.4
NC_016605:50695:6941669416709451530Pediococcus claussenii ATCC BAA-344 chromosome, complete genomesubstrate binding domain of ABC-type glycine betaine transport system family protein1e-1687
NC_014479:3245126:326349132634913264162672Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease2e-1686.3
NC_009495:1759759:1776428177642817780141587Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease/substrate-binding protein2e-1686.3
NC_016626:400080:403660403660404385726Burkholderia sp. YI23 plasmid byi_1p, complete sequencebinding-protein-dependent transport system inner membrane protein3e-1685.5
NC_009512:1025365:102536510253651026078714Pseudomonas putida F1, complete genomebinding-protein-dependent transport systems inner membrane component5e-1684.7
NC_011999:1567818:158318915831891583833645Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein5e-1684.7
NC_016047:3406488:342124934212493421920672Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBD6e-1684.3
NC_016047:3406488:342553434255343426202669Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeglycine betaine/carnitine/choline transport system permease OpuCD1e-1583.2
NC_012526:4462:2070020700218811182Deinococcus deserti VCD115, complete genomeputative proline/glycine betaine2e-1583.2
NC_014643:1251847:126919912691991269891693Rothia dentocariosa ATCC 17931 chromosome, complete genomeglycine ABC transporter permease2e-1582.8
NC_013520:1905554:1927618192761819291501533Veillonella parvula DSM 2008, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system2e-1582.8
NC_014479:3245126:326906732690673269741675Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeglycine betaine/carnitine/choline/choline sulfate ABC transporter permease2e-1582.8
NC_012883:1695703:169630716963071696936630Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-2)4e-1581.6
NC_008595:312861:312178312178312864687Mycobacterium avium 104, complete genomeABC transporter, permease protein4e-1581.6
NC_009792:2688747:271131327113132711945633Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-1581.3
NC_010718:128423:143328143328144173846Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component1e-1480.5
NC_002944:292974:292974292974293660687Mycobacterium avium subsp. paratuberculosis K-10, complete genomeProW9e-1580.5
NC_013406:5066769:510821851082185108883666Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-1479.7
NC_015589:3241364:324292832429283243569642Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-1479.7
NC_011999:1567818:158473315847331585425693Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein4e-1478.6
NC_009925:647752:652404652404653033630Acaryochloris marina MBIC11017, complete genomebinding-protein-dependent inner membrane transport system, putative5e-1477.8
NC_013406:5066769:510984751098475110548702Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component5e-1477.8
NC_018515:4196409:422021942202194220863645Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease7e-1477.4
NC_016047:3406488:342286934228693423522654Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBB7e-1477.4
NC_014479:3245126:326511132651113265764654Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease9e-1477.4
NC_008525:270310:2858552858552873841530Pediococcus pentosaceus ATCC 25745, complete genomeABC-type proline/glycine betaine transport system, permease and substrate binding protein1e-1273.6
NC_021175:881845:8818458818458833651521Streptococcus oligofermentans AS 1.3089, complete genomecholine ABC transporter permease2e-1272.4
NC_002678:6061448:6061448606144860634271980Mesorhizobium loti MAFF303099, complete genomeABC transporter permease protein6e-1271.2
NC_014121:2247913:226354522635452264255711Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative osmoprotectant transport system permease protein9e-1270.5
NC_012526:4462:190471904719766720Deinococcus deserti VCD115, complete genomeputative proline/glycine betaine1e-1170.1
NC_010612:6385520:639963263996326400312681Mycobacterium marinum M, complete genomeosmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter ProW2e-1169.7
NC_014315:2711852:2731698273169827332031506Nitrosococcus watsoni C-113 chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein2e-1169.7
NC_020260:1111130:1112092111209211132251134Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehY2e-1169.3
NC_009778:1070000:1070004107000410711371134Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-1169.3
NC_020133:5965500:596795059679505968630681Mycobacterium liflandii 128FXT, complete genomeosmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter ProW5e-1168.2
NC_012883:1695703:169570316957031696320618Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-1)5e-1168.2
NC_007963:2644930:264611626461162646847732Chromohalobacter salexigens DSM 3043, complete genomebinding-protein-dependent transport systems inner membrane component1e-1067
NC_016626:400080:401837401837402541705Burkholderia sp. YI23 plasmid byi_1p, complete sequencebinding-protein-dependent transport system inner membrane protein2e-1066.2
NC_004557:2475030:247973424797342480561828Clostridium tetani E88, complete genomeputative glycine-betaine binding permease protein2e-1065.9
NC_009381:1783886:1821090182109018222441155Yersinia pestis Pestoides F chromosome, complete genomeglycine betaine transporter membrane protein4e-1065.1
NC_011832:1399446:139883913988391399453615Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component2e-0963.2
NC_015278:538500:5586705586705602111542Aerococcus urinae ACS-120-V-Col10a chromosome, complete genometoxin-antitoxin system toxin component, PIN family1e-0963.2
NC_020260:1111130:111415211141521114883732Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehW3e-0962
NC_009778:1070000:107206410720641072795732Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0962
NC_007576:1854136:1854136185413618556621527Lactobacillus sakei subsp. sakei 23K, complete genomePutative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits5e-0961.2
NC_010002:2933909:2935066293506629362651200Delftia acidovorans SPH-1, complete genomebinding-protein-dependent transport systems inner membrane component3e-0858.9
NC_020207:2240115:2253560225356022552871728Enterococcus faecium NRRL B-2354, complete genomeGlycine betaine ABC transport permease OpuABC3e-0858.9
NC_015733:2581324:2584695258469525866471953Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-0857.8
NC_009615:4693164:469577346957734696588816Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycine betaine/L-proline transport system permease6e-0857.8
NC_008148:583030:608947608947609600654Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component1e-0757
NC_008148:1567703:157570915757091576575867Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component1e-0757
NC_008687:965152:989964989964990845882Paracoccus denitrificans PD1222 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component2e-0756.2
NC_015733:2581324:262021326202132621145933Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0756.2
NC_008595:312861:312861312861313577717Mycobacterium avium 104, complete genomeABC transporter, permease protein2e-0756.2
NC_002944:292974:293657293657294373717Mycobacterium avium subsp. paratuberculosis K-10, complete genomeProZ2e-0756.2
NC_010505:2657683:265864226586422659493852Methylobacterium radiotolerans JCM 2831, complete genomebinding-protein-dependent transport systems inner membrane component2e-0755.8
NC_005071:588541:609012609012609926915Prochlorococcus marinus str. MIT 9313, complete genomeABC transporter,membrane component, glycine betaine/proline family3e-0755.5
NC_007492:3180480:3205029320502932071252097Pseudomonas fluorescens PfO-1, complete genomeGlycine betaine/L-proline ABC transporter, ATPase/permease fusion protein, putative4e-0755.1
NC_006347:3805500:380706738070673807891825Bacteroides fragilis YCH46, complete genomeglycine betaine/L-proline transport system permease1e-0653.5
NC_014643:1251847:126988812698881270634747Rothia dentocariosa ATCC 17931 chromosome, complete genomeglycine betaine/choline ABC transporter membrane protein2e-0653.1
NC_019978:2036779:205052220505222051355834Halobacteroides halobius DSM 5150, complete genomeABC-type proline/glycine betaine transport system, permease component4e-0652
NC_015556:1188500:120853012085301209429900Pseudomonas fulva 12-X chromosome, complete genomebinding-protein-dependent transport systems inner membrane component8e-0650.8