Pre_GI: BLASTP Hits

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Query: NC_008044:857759:858001 Silicibacter sp. TM1040, complete genome

Start: 858001, End: 858372, Length: 372

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014664:1614568:162657216265721626949378Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeputative transcription regulator with HTH domain2e-38157
NC_014217:2987450:300083130008313001205375Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, XRE family6e-36149
NC_008571:938835:9997259997251000081357Gramella forsetii KT0803, complete genomeHTH_3 family transcriptional regulator protein5e-28122
NC_015638:3202491:320866532086653209021357Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeXRE family transcriptional regulator1e-25115
NC_010602:2244729:233154123315412331945405Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'transcription regulator2e-25114
NC_010842:2310756:233692823369282337332405Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosometranscription regulator containing HTH domain2e-25114
NC_015496:3256372:327014932701493270505357Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genometranscriptional regulator, XRE family4e-25113
NC_015731:2811579:281922628192262819600375Nitrosomonas sp. Is79A3 chromosome, complete genomeXRE family transcriptional regulator4e-24109
NC_013209:2582878:259546125954612595841381Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator helix turn helix domain5e-23106
NC_010995:948041:972078972078972461384Cellvibrio japonicus Ueda107, complete genomehypothetical protein3e-22103
NC_020209:3262000:326389932638993264255357Pseudomonas poae RE*1-1-14, complete genomehypothetical protein5e-22102
NC_012997:3651993:365574636557463656114369Teredinibacter turnerae T7901, complete genomehelix-turn-helix domain protein9e-22102
NC_021150:3282702:329563132956313296008378Azotobacter vinelandii CA6, complete genometranscriptional regulatior protein6e-2199.4
NC_012560:3282704:329563332956333296010378Azotobacter vinelandii DJ, complete genometranscritional regulatior protein6e-2199.4
NC_011901:2202690:221424522142452214619375Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetranscription regulator with HTH domain-containing protein4e-2096.7
NC_010511:1273610:127900812790081279430423Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein9e-2095.5
NC_013361:1558423:156937915693791570035657Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional regulator4e-1993.6
NC_007948:1574881:158598215859821586362381Polaromonas sp. JS666, complete genometranscription regulator containing helix turn helix domain8e-1992.4
NC_012796:4075583:4134464413446441356391176Desulfovibrio magneticus RS-1, complete genomeXre family DNA-binding protein5e-1889.7
NC_008782:2568027:2608143260814326093721230Acidovorax sp. JS42, complete genomehelix-turn-helix domain protein3e-1580.5
NC_008783:222000:259768259768260124357Bartonella bacilliformis KC583, complete genomeputative HTH-type transcriptional regulator ygjM7e-1475.9
NC_013850:2182337:219376921937692194347579Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, XRE family9e-1475.5
NC_018080:1730534:1742911174291117441371227Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1374.7
NC_007406:3354000:336976133697613370135375Nitrobacter winogradskyi Nb-255, complete genometranscriptional regulator, XRE family2e-0961.2
NC_016616:1534983:1547546154754615487601215Dechlorosoma suillum PS chromosome, complete genomeputative transcription regulator containing HTH domain4e-0856.6
NC_010602:2244729:228503322850332285434402Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'hypothetical protein5e-0753.1
NC_010842:2250119:229041922904192290820402Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeTranscription regulator containing HTH domain5e-0753.1
NC_015633:2565753:258536125853612585627267Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein7e-0649.3