Pre_GI: BLASTP Hits

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Query: NC_008042:86070:90028 Silicibacter sp. TM1040 plasmid unnamed, complete sequence

Start: 90028, End: 90330, Length: 303

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010510:139685:159493159493159819327Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completetranscriptional regulator, XRE family1e-24111
NC_011420:852643:872065872065872367303Rhodospirillum centenum SW, complete genomeDNA-binding protein, putative8e-2095.5
NC_012791:2832001:284033328403332840713381Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family2e-1167.8