Pre_GI: BLASTP Hits

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Query: NC_007953:314872:340370 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 340370, End: 340618, Length: 249

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021184:569653:590494590494591000507Desulfotomaculum gibsoniae DSM 7213, complete genome3-isopropylmalate dehydratase, small subunit9e-0855.8
NC_003413:893960:903829903829904323495Pyrococcus furiosus DSM 3638, complete genomeisopropylmalate isomerase1e-0755.1
NC_018867:993903:101108210110821011570489Dehalobacter sp. CF chromosome, complete genome3-isopropylmalate dehydratase small subunit3e-0754.3
NC_000868:1299027:130821013082101308704495Pyrococcus abyssi GE5, complete genomeisopropylmalate isomerase3e-0753.9
NC_015474:1216971:122960712296071230101495Pyrococcus sp. NA2 chromosome, complete genome3-isopropylmalate dehydratase small subunit5e-0753.1
NC_019970:8938:168271682717312486Thermoanaerobacterium thermosaccharolyticum M0795, complete genome3-isopropylmalate dehydratase, small subunit1e-0651.6
NC_014410:8694:166011660117086486Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,3-isopropylmalate dehydratase, small subunit1e-0651.6
NC_010730:346287:345797345797346294498Sulfurihydrogenibium sp. YO3AOP1, complete genome3-isopropylmalate dehydratase, small subunit2e-0651.2
NC_000961:1481685:151333315133331513824492Pyrococcus horikoshii OT3, complete genomeisopropylmalate isomerase2e-0651.2
NC_011296:102650:117619117619118125507Thermodesulfovibrio yellowstonii DSM 11347, complete genome3-isopropylmalate dehydratase small subunit2e-0651.2
NC_014926:295988:315156315156315659504Thermovibrio ammonificans HB-1 chromosome, complete genome3-isopropylmalate dehydratase, small subunit2e-0650.8
NC_015555:4478:165531655317038486Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete3-isopropylmalate dehydratase small subunit3e-0650.4