Pre_GI: BLASTP Hits

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Query: NC_007953:1434705:1439430 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1439430, End: 1439951, Length: 522

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013716:3512950:354975935497593550055297Citrobacter rodentium ICC168, complete genomeputative transcriptional regulator2e-1995.1
NC_009838:81913:860388603886334297Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencehypothetical protein5e-1993.6
NC_011149:4677412:469231746923174692622306Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transcriptionl regulator HipB5e-1890.5
NC_009838:81913:117517117517117816300Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceputative transcriptional regulator5e-1787
CU928145:3983432:399268139926813993010330Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator6e-1787
NC_011748:3983432:399268139926813993010330Escherichia coli 55989, complete genomeputative transcriptional regulator6e-1787
NC_015138:5046921:505157250515725051982411Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehelix-turn-helix domain-containing protein9e-1166.2
NC_015563:4583906:459903645990364599437402Delftia sp. Cs1-4 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0753.1