Pre_GI: BLASTP Hits

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Query: NC_007952:3238241:3249170 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3249170, End: 3249586, Length: 417

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:5768000:577760357776035777962360Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator6e-2199.4
NC_012483:3731542:378720337872033787583381Acidobacterium capsulatum ATCC 51196, complete genomeputative DNA-binding protein2e-0754.7
NC_014391:6749156:676211367621136762490378Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0753.5
NC_007777:4796627:480447748044774804851375Frankia sp. CcI3, complete genometranscriptional regulator, XRE family5e-0753.1