Pre_GI: BLASTP Hits

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Query: NC_007952:2812996:2831856 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 2831856, End: 2832875, Length: 1020

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007778:3784104:3813540381354038145651026Rhodopseudomonas palustris HaA2, complete genomeextracellular solute-binding protein, family 31e-57223
NC_014910:1765065:1785915178591517869701056Alicycliphilus denitrificans BC chromosome, complete genomeabc-type nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding subunit2e-40166
NC_011894:2359128:2359128235912823601501023Methylobacterium nodulans ORS 2060, complete genomeNMT1/THI5 like domain protein1e-37157
NC_005085:2457295:247745824774582478441984Chromobacterium violaceum ATCC 12472, complete genomeprobable taurine transport system substrate-binding protein2e-29129
NC_014221:687537:6914436914436925761134Truepera radiovictrix DSM 17093 chromosome, complete genomeNMT1/THI5 like domain protein5e-1685.5
NC_013894:672840:680907680907681881975Thermocrinis albus DSM 14484 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein7e-0962
NC_012225:345704:353092353092354075984Brachyspira hyodysenteriae WA1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system2e-0757.4
NC_018607:290500:309773309773310753981Brachyspira pilosicoli B2904 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter1e-0654.3
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein3e-0653.1
NC_015172:1002872:1004285100428510052951011Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeextracellular solute-binding protein family 35e-0652.4
NC_012225:345704:358022358022358945924Brachyspira hyodysenteriae WA1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system6e-0652