Pre_GI: BLASTP Hits

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Query: NC_007951:925442:946396 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 946396, End: 946794, Length: 399

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015727:764744:772291772291772707417Cupriavidus necator N-1 plasmid BB1p, complete sequencehypothetical protein8e-2199
NC_015581:1731120:173645617364561737106651Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeanti-ECFsigma factor ChrR2e-0961.2
NC_014355:3669470:367034436703443670928585Candidatus Nitrospira defluvii, complete genomehypothetical protein2e-0960.8
NC_014502:113839:133104133104133757654Cyanothece sp. PCC 7822 plasmid Cy782203, complete sequenceanti-ECF sigma factor ChrR6e-0959.3
NC_008750:2332000:234430223443022344970669Shewanella sp. W3-18-1, complete genomeanti-ECFsigma factor, ChrR4e-0856.6
NC_009925:2240871:225630122563012256981681Acaryochloris marina MBIC11017, complete genomehypothetical protein7e-0855.8
NC_008740:443274:482796482796483464669Marinobacter aquaeolei VT8, complete genomeanti-ECFsigma factor, ChrR3e-0753.9
NC_016147:1672482:167872216787221679390669Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeanti-ECFsigma factor ChrR8e-0752.4