Pre_GI: BLASTP Hits

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Query: NC_007951:925442:938553 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 938553, End: 939626, Length: 1074

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010505:5583000:5600417560041756014751059Methylobacterium radiotolerans JCM 2831, complete genomeNAD-dependent epimerase/dehydratase3e-68259
NC_010125:2884762:2933396293339629344511056Gluconacetobacter diazotrophicus PAl 5, complete genomeputative NAD dependent epimerase/dehydratase protein2e-56219
NC_010172:1199725:1217408121740812185351128Methylobacterium extorquens PA1, complete genomeNAD-dependent epimerase/dehydratase1e-51203
NC_020064:1409596:1449039144903914500971059Serratia marcescens FGI94, complete genomenucleoside-diphosphate-sugar epimerase5e-50198
NC_010084:2171881:2179465217946521805321068Burkholderia multivorans ATCC 17616 chromosome 1, completeNAD-dependent epimerase/dehydratase3e-40166
NC_010804:1334581:1344241134424113453081068Burkholderia multivorans ATCC 17616 chromosome 1, completepredicted nucleoside-diphosphate-sugar epimerase3e-40166
NC_016943:2391366:2404925240492524059951071Blastococcus saxobsidens DD2, complete genomeNAD-dependent epimerase/dehydratase4e-39162