Pre_GI: BLASTP Hits

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Query: NC_007951:4741620:4746767 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4746767, End: 4747777, Length: 1011

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015850:510837:5108375108375118441008Acidithiobacillus caldus SM-1 chromosome, complete genomesodium/calcium exchanger membrane protein3e-66252
NC_016584:5420823:5432454543245454334731020Desulfosporosinus orientis DSM 765 chromosome, complete genomeCa2+/Na+ antiporter5e-44178
NC_021184:1257722:127488012748801275869990Desulfotomaculum gibsoniae DSM 7213, complete genomeCa2+/Na+ antiporter4e-38159
NC_015949:71474:7147471474724811008Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomesodium/calcium exchanger membrane region1e-37157
NC_013665:257438:2737122737122747701059Methanocella paludicola SANAE, complete genomesodium/calcium exchanger protein3e-29129
NC_005085:2609934:262675126267512627749999Chromobacterium violaceum ATCC 12472, complete genomeprobable cation antiporter5e-22105
NC_008578:2226778:2229427222942722304581032Acidothermus cellulolyticus 11B, complete genomesodium/calcium exchanger membrane region6e-2098.6
NC_015587:90539:103124103124104083960Hydrogenobaculum sp. SHO chromosome, complete genomesodium/calcium exchanger membrane region3e-1995.9
NC_015557:90503:103088103088104047960Hydrogenobaculum sp. 3684 chromosome, complete genomesodium/calcium exchanger membrane region3e-1995.9
NC_020411:90538:103123103123104082960Hydrogenobaculum sp. HO, complete genomesodium/calcium exchanger membrane region3e-1995.9