Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4614567 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4614567, End: 4615022, Length: 456

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010681:221416:232542232542233501960Burkholderia phytofirmans PsJN chromosome 1, complete sequenceputative uncharacterized conserved protein1e-1891.7
NC_017075:1869326:189109618910961892055960Rubrivivax gelatinosus IL144, complete genomehypothetical protein1e-1685.1
NC_008825:2063990:207192620719262072846921Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-1065.1
NC_012791:4794362:479977747997774800709933Variovorax paradoxus S110 chromosome 1, complete genomeprotein of unknown function DUF1594e-1063.5
NC_007908:3363902:337819633781963379143948Rhodoferax ferrireducens T118, complete genomeputative uncharacterized conserved protein7e-0959.7
NC_020541:1786500:180255018025501803539990Rhodanobacter sp. 2APBS1, complete genomehypothetical protein4e-0857
NC_007908:1252189:126939612693961270343948Rhodoferax ferrireducens T118, complete genomeputative uncharacterized conserved protein6e-0856.2
NC_010678:900389:920374920374920766393Ralstonia pickettii 12J chromosome 2, complete sequencehypothetical protein7e-0856.2
NC_012857:41946:619316193162323393Ralstonia pickettii 12D chromosome 2, complete genomehypothetical protein7e-0856.2